Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1039 ATGGTGTGTTTGGGGTTTGATATGGATGAGGTTGACTCCGAAAGATTGAAACTTTGGTTGGTTAAGAGGGTGAGACTCGGGATTTTGTTGAGAATTGCATTTGGTTTGTGGGTGTTTCTCTTCTTTCTTAGTCCGGTGGCAGGTTTGAGACCCTTAAGGGACAGAACTAGTTCGTGGGGTGATGAGTGGGTTTTTACAAGAAAAGATGAAAGTGACTCAGGTCCATTTTCACAATGGAACATAACTGGAACTTACAGAGGGACTTGGAAGTTTTTAGATACTGCAAATGGCTCTACCAGATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTTATTGAATTAGTTAGTACACCCACAAAGATAACTGGTGTGCATTATGTGCAGGGGGTAGTTATATTCCATGATGTGTTTGACAATGAATACAATGTTGGTGGTGCTCAAATCAGAGTAGAAGGTGTATATATTTGGCCTTATAGGCAGCTGCGAATGGTAGCAAACAGTGGAAAAGAGGGAGGGTTAAGTCAGGATGGAGATTATATTTTATCTAACCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCACGAAATAAGATGTGGAGCAGAAAGCATTCTCCATTGCATGGCATGGAGAAACATTGCAACGTAGAAATTGCCGCTCAGGTTTCACGATTGTCATCATCAAAACATGAAGGAGAGCATGATTCTTTTCAACTAGAAGGGTTAATGGAGAGTCCGTCAGTGGATGATGATGGGGACTGCTTCTCACCTTTACAGTTAAATGCGACATCTATTAACATTGAAGTTTACTATAACAAAGCAGTGAACTATACTTTGATGGTTACTTTTATCTCTTTTTTGCAAGTCCTTCTATTAATCAGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTGTCAATACTAATGATTGGTCAGCAAGCTATAGTAGATGCTTATCTTTGCCTTATACATTTAACTGCAGGAATACTAGTTGAATCCTTGTTCAACGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTTTCAATATTTGAGATGAGATACCTCCTTGCCATCTGGAAGGCAAATAGGCCTTTGAGCAGTGGTGAAGGTTGGGAGACAATGAGGCGTGAGCTGTCAGTTCTATACAGCCGTTTCTACGGGATCCTATTGGGTGGCATTCTACTTATGTATGAATTCCATAATCATTTGAGACTTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACTAATGTTGTTCGTGATTCACGCAAACCATTGCATCCTCATTATATCTTAGGCATAACTGTTACTCGGGTAGCAATCCCATTATATATATTTGGTTGTCCAAACAACTTCTTGCGCATAGAACCAGATCAGAGCTGGTGCGTTTGTTTAGTTGTATTTGTTGGACTTCAAGCGGCAACTCTCCTCCTTCAGCACTATTTTGGGTCCCGGTGGTTCATTCCTCATCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTTACTCAAGATACAAATCATGCCACAGACTGTGTTATATGCATGACAGCCATTGATCTTTTTCCACGATCTAACGATTGCATGGTGACCCCTTGTGATCATTTTTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCCCCCTTCCACCTGCATGA 1737 0.4064 MVCLGFDMDEVDSERLKLWLVKRVRLGILLRIAFGLWVFLFFLSPVAGLRPLRDRTSSWGDEWVFTRKDESDSGPFSQWNITGTYRGTWKFLDTANGSTRFPDIRKINGNSVIELVSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKEGGLSQDGDYILSNPYHLLGVFSSQVFQESSRNKMWSRKHSPLHGMEKHCNVEIAAQVSRLSSSKHEGEHDSFQLEGLMESPSVDDDGDCFSPLQLNATSINIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSSGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNHLRLILLLVYSFWIPQIITNVVRDSRKPLHPHYILGITVTRVAIPLYIFGCPNNFLRIEPDQSWCVCLVVFVGLQAATLLLQHYFGSRWFIPHQILPEKYSYYRRFTQDTNHATDCVICMTAIDLFPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1039 578 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 16 578 - -
Apr3g1039 578 SUPERFAMILY RING/U-box 513 577 - -
Apr3g1039 578 SMART ringv_2 527 572 IPR011016 GO:0008270
Apr3g1039 578 SMART ring_2 528 571 IPR001841 -
Apr3g1039 578 Pfam Ring finger domain 527 572 IPR001841 -
Apr3g1039 578 ProSiteProfiles Zinc finger RING-type profile. 528 572 IPR001841 -
Apr3g1039 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 578 IPR013083 -
Apr3g1039 578 PANTHER RING ZINC FINGER PROTEIN 16 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1039 Apr-Chr3 25114809 25124201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1039 528 575 C3H Transcription Factor Family AT4G12190 39.583 1.82e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1039 K23788 - gmx:100802452 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1039 3 25114809 25124201 Apr3g1039 3 25114809 25124201 ECH