Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1035 ATGCCCGCTCAGAAGCGTTCCTTCAATGACTCTCTCCACGATCACCACCGTCACGCCAAGCAACACCAACAGGAAGAGGAAGAACCACAGCAAGAAGAAGAAGAAGAAGAAGAGAACAATAAATCAGAGGATTCTGACCACACCCCTTCTTCTGCCTCTCAAGACAAATCCGAATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAAGAGGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACACGGACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGTACGCACTGTGCTAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCCCTAATTGCAGCTTTATATCCAGATATTGAGAAGTATGAGAAAGAGGAGCTTGAGTTTCGTGAAGAGGACAAGAACCGCAATATGCTGATTCAGGCTTCAATTGCAAGAGTTGTTGAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCCTTTGTGACAAGATCACGCCGCAATCAACGAAATGTTCTCTCTAGGAGACCAAACCAAGTGATTGATAATCAAGGATCTGAAGATAACGAGGAGGAAAACAATAATGAAAAGGACTCATCTTCCGCAGAGGAGCGATGCACAGAATTCAGGCAGAGAACGCGGAAGAGGCGGACCAGAGGTCACCCTTCTCATCCCTCATCATCAACTGCTAGTCCTGATGGTGGATGCATGGAAAGTGATATGGATATAAGTCGAGAAAATCAAGGAATTTCTTCTAGGCAGATGCCAAAACCTCAAAAGCTAACATGGGGAAGGGGCGGTTTTAGAAGTCACACACGGCATGGCAGTAGCAATGGTAGCAATAGCAAAAGTGCTCGCAGTAGTCGCTTGGCTAAGTTGGTTGATTATCTCCGTAACTTGGATGAAAACGCTGATGAGTTTGGTGTCCATCTCATGCTCTTGTCTTTGGACAAACAAAGTACACCAAATTTGCAGAAACCACACCTTATCTGTCGGCCAACATTGTCTGTGAAGCACCTTTGTGAATATGTTGCTAGTCAGACGCCTCTGCCAGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCAACAGTACATTTTGTAACAAGTCAGTTGATGAGGCTTCATCATTCTCTGATGAGCTAACAACGCTGGTTATAGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGGCATGAATCTTTGGCAGGGCTTAAATCCAAAAGCATATCTAAAAAGGAGCATTTGATTCTGGCATACAGGCGGAAGGAATGA 1353 0.4405 MPAQKRSFNDSLHDHHRHAKQHQQEEEEPQQEEEEEEENNKSEDSDHTPSSASQDKSEFVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEKEELEFREEDKNRNMLIQASIARVVERQSEALVKRRRDTPGSFVTRSRRNQRNVLSRRPNQVIDNQGSEDNEEENNNEKDSSSAEERCTEFRQRTRKRRTRGHPSHPSSSTASPDGGCMESDMDISRENQGISSRQMPKPQKLTWGRGGFRSHTRHGSSNGSNSKSARSSRLAKLVDYLRNLDENADEFGVHLMLLSLDKQSTPNLQKPHLICRPTLSVKHLCEYVASQTPLPVEEVEILAVKGCNSTFCNKSVDEASSFSDELTTLVIDPSKDELETLQGHESLAGLKSKSISKKEHLILAYRRKE* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1035 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 142 IPR013083 -
Apr3g1035 450 SMART ring_2 73 112 IPR001841 -
Apr3g1035 450 MobiDBLite consensus disorder prediction 187 209 - -
Apr3g1035 450 SUPERFAMILY RING/U-box 60 144 - -
Apr3g1035 450 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 14 450 - -
Apr3g1035 450 MobiDBLite consensus disorder prediction 8 27 - -
Apr3g1035 450 MobiDBLite consensus disorder prediction 1 55 - -
Apr3g1035 450 Pfam Zinc finger, C3HC4 type (RING finger) 72 112 - -
Apr3g1035 450 MobiDBLite consensus disorder prediction 175 312 - -
Apr3g1035 450 ProSitePatterns Zinc finger RING-type signature. 89 98 IPR017907 -
Apr3g1035 450 ProSiteProfiles Zinc finger RING-type profile. 73 113 IPR001841 -
Apr3g1035 450 MobiDBLite consensus disorder prediction 220 236 - -
Apr3g1035 450 CDD RING-HC_RING1_like 73 113 - -
Apr3g1035 450 PANTHER OS11G0578200 PROTEIN 14 450 IPR044592 -
Apr3g1035 450 MobiDBLite consensus disorder prediction 269 283 - -
Apr3g1035 450 MobiDBLite consensus disorder prediction 296 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1035 Apr-Chr3 25086454 25093577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1035 66 136 C3H Transcription Factor Family AT3G23060 35.135 4.59e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1035 K10695 - gmx:100819311 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1035 3 25086454 25093577 Apr3g1035 3 25086454 25093577 ECH