Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1032 ATGAGTAGTGTTTGTGCAGAGCACAAGTTTCAACTTCAACCCTCTCACCAACTTCTCTCCCTCAAGAAATCCCTGAGGGACATTGACATCCCTCCAAGGAAGCTTCTCACCCGCCGCGCCTCCGCCGCTGCCGCCCGTGATGGCGCCGGCGACTTGTTTTCCGATGATACCCTCTTTCAGAAATACCTTCCCCACAATGACCAAGTGGAATCTGATGATGACTCCGGCGACCCTTATGCCTCCGATGACTTCCGGATGTTTGAGTTCAAGGTCCGGCGATGCACTCGCAGCCGGAGCCATGACTGGACAGACTGTCCTTTTGCACATCCCGGCGAGAAGGCCCGCCGTCGTGACCCTCGCCGGTTTCACTACTCTGGGACAGTGTGTCCAGAGTATCGCCGCGCCGGTGGGTGCAGCCGTGGCGATGCATGTGAGTTTTCTCACGGTGTTTTTGAGTGCTGGTTGCACCCTTCTAGGTATAGAACTGAAGCTTGCAAAGATGGTAAGAATTGTAAGCGAAAGGTTTGCTTCTTTGCTCACACTCCACGCCAATTAAGGGTTTTGCCTCTTAATGAGAACAACAATAACAAGTGCAACAGTAACATGAGCAAAAATAACCATTGTTGTGTGTTTTGTCATTGCTGTTCTTCTTCTTCTACTTGTTCACCAACTTCTACTTTGTTTGGCATGTCCCATTTTTCTCCTCCTTTGTCACCTTCTTCTTCTTCTTCCCCTTCTTCTTCTTCAAGGTTTGTGGGGTCTGAGAGTAACCATCCTGGTGTTGTGAGCTATAAGGATGTGTTCTCTGAGCTTATGTGTTCCTTGGAGGGTTTGAATTTTGGTGAGGCTTCTCCTGTGTCTGCTTCTACACCTCACAATTTGTCTTGGCTTGATGTTTCTTTCAACTCTGAGGATCAGCAACAGTTCATTCTTTCACCAACCATCACTTCTTCAATCTTTTCCAATAATGGGAAATGTTCAAGTGGCAAGTTCTCGAGGGAAGAGAATAGAGTTGTTGATGATGTCATTGCCCCGGATCTCGGGTGGGTGAATGACTTGCTGATGTAA 1068 0.4831 MSSVCAEHKFQLQPSHQLLSLKKSLRDIDIPPRKLLTRRASAAAARDGAGDLFSDDTLFQKYLPHNDQVESDDDSGDPYASDDFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRAGGCSRGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPLNENNNNKCNSNMSKNNHCCVFCHCCSSSSTCSPTSTLFGMSHFSPPLSPSSSSSPSSSSRFVGSESNHPGVVSYKDVFSELMCSLEGLNFGEASPVSASTPHNLSWLDVSFNSEDQQQFILSPTITSSIFSNNGKCSSGKFSREENRVVDDVIAPDLGWVNDLLM* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1032 355 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 27 354 - -
Apr3g1032 355 SUPERFAMILY CCCH zinc finger 122 153 IPR036855 GO:0046872
Apr3g1032 355 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Apr3g1032 355 SMART c3hfinal6 123 150 IPR000571 GO:0046872
Apr3g1032 355 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Apr3g1032 355 PANTHER UNKEMPT FAMILY MEMBER 27 354 IPR045234 -
Apr3g1032 355 Gene3D - 120 188 - -
Apr3g1032 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1032 Apr-Chr3 25067647 25068714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1032 79 244 C2H2 Transcription Factor Family AT5G12850 49.398 1.03e-50 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr3g1032 zf-CCCH 5.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1032 K23047 - pvu:PHAVU_011G125300g 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1032 3 25067647 25068714 Apr3g1032 3 25067647 25068714 ECH