Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1025 ATGCTCGCGGTGTCACCTTTTAGGAGCACCAAAGATGAAAAAATCCAAGGAGCGATGGAGGGTTTTGCCATGGCAACCACAACCTCAACAAATGATGTTGACTTTGGTGAACTCTCTGAAGGGAACTTATTGGAGAGCATTGATTTTGATGACCTCTTTGTCGGCATCAACGTCGACGGCGATGTCTTGCCGGATTTGGAAATGTTCGGTGAGTTCTCCGTCAGCGCCGCGGAGGAATCGGAGATGAACGACTCGGTGGAGAACAAGGTTGAGAATAATGATACTCAGAATATTGATATTACTACTTCTTCCAAGAAAGAAGATGAAGATAAAACCTCTTGTTGTGCTGCTTCGGGTCAAGACTTGGGGTCAAACCAAGGAGAAGAGATTGTGAGTAAGAGAGATGAATCTGTGGTGGTGAATTCGTCTTTGAAGGAAGGTGGAAAAGGAAGAAAATCTTCATCAGCTCAATCGAAGAATAATAGTAGTAATAATAATAATAATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACCCCAGAATTGCATAGGCGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGATAAGGCAGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGCCACCTTCAAAAATATAGATCCCATAGAAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCGAGTTGGAGTCAAAGAAGGCAAATGTATGGGGGAGGAGGGAAGAGAGAGGTAAGTCCCTGGCCAGCACCCATCATGGGGTTCCCTCCCATCAACCCAATGCACCATTTTAGACATCTACATGTATGGGGGCATCCATCCATGGACCAGTCCTTCATGCACATGTGGCCTAAACATCTACCACAGCATTCGCCGCCACCTCCGCCGCCACACTCTTGGGCACCGACGGCAGCTCCACCAGCACCTCAAGATCCTTCCTTTTGGCACGCTCAGCACCAAGGGGCTCCAAACGCACTAATACCAGGAACACCTTGTTTTCCACAACCTCTGACAACAACGAGATTTGGATGTCCACCTGTCCCCGGCATCCCACCCCATGCCATGTACAAACCACCAGATCACGCCACCGCCGTCCCTCCTCCCCGGCCCCTCTTTGATTTCCATCCGTCAAAGGAGAGCATAGACTCAGCCATTGGAGATGTTTTATCAAAACCGTGGCTGCCACTACCTCTTGGACTTAAGGCTCCAGCGCTTGATAGTGTGCTGAGTGAATTACAGAGACAAGGGATTCCAAACATTCCACCCTCTAGTGCTTGA 1314 0.4833 MLAVSPFRSTKDEKIQGAMEGFAMATTTSTNDVDFGELSEGNLLESIDFDDLFVGINVDGDVLPDLEMFGEFSVSAAEESEMNDSVENKVENNDTQNIDITTSSKKEDEDKTSCCAASGQDLGSNQGEEIVSKRDESVVVNSSLKEGGKGRKSSSAQSKNNSSNNNNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQMYGGGGKREVSPWPAPIMGFPPINPMHHFRHLHVWGHPSMDQSFMHMWPKHLPQHSPPPPPPHSWAPTAAPPAPQDPSFWHAQHQGAPNALIPGTPCFPQPLTTTRFGCPPVPGIPPHAMYKPPDHATAVPPPRPLFDFHPSKESIDSAIGDVLSKPWLPLPLGLKAPALDSVLSELQRQGIPNIPPSSA* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1025 437 MobiDBLite consensus disorder prediction 299 321 - -
Apr3g1025 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 230 IPR017930 -
Apr3g1025 437 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 437 - -
Apr3g1025 437 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 174 228 IPR006447 GO:0003677
Apr3g1025 437 MobiDBLite consensus disorder prediction 77 175 - -
Apr3g1025 437 Gene3D - 171 232 - -
Apr3g1025 437 SUPERFAMILY Homeodomain-like 172 231 IPR009057 -
Apr3g1025 437 Pfam Myb-like DNA-binding domain 177 226 IPR001005 -
Apr3g1025 437 MobiDBLite consensus disorder prediction 296 329 - -
Apr3g1025 437 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 437 IPR044825 GO:0003700|GO:0045893
Apr3g1025 437 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1025 Apr-Chr3 25022051 25026537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1025 1 300 G2-like Transcription Factor Family AT5G44190 43.631 3.24e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr3g1025 Myb_DNA-binding 5.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1025 - - gmx:100799248 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1025 3 25022051 25026537 Apr3g1025 3 25022051 25026537 ECH