Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr3g1023 | ATGGGTGTAGATTACTACAAGATCTTGCAGGTGGATAAGAATGCCAAAGACGATGACTTGAAGAAGGCTTATAGGAAACTTGCCATGAAATGGCACCCTGATAAGAACCCAAACAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCAGAAGCCTATGAGGTACTTAGTGATCCTCAGAAGAGAACTGTCTATGATCAATATGGAGAAGAAGGTCTCAAGGGTCAGGTTCCTCCTCCTGATGCTGGTGGTGCTGGAACTACTTTCTTTTCCACAGGAGACATGCCAGGATCTTTTCGATTCAATCCCAGGAATGCTGATGACATTTTTGCAGAATTTTTTGGGTTTTCAAGCCCATTTGGTGGCATGGGTGGAAGAGGTGGCGGCGGAGGCATGAGATCAAGGAAAACCATGCCAGTGGAGGAGATCTTGACAATTAATGTCAAGCCTGGTTGGAAGAAGGGAACAAAGATCACCTTCCCAGAGAAAGGAAATGAACAGCCAAATGCCTTAACTGGTTACACAGTGCATCTCACTACCTTGGATGGTAGAAACTTAAGCATACCGATCAACAGTGTTATTCATCCTAACTATGAGGAGGTTGTTCCAAGAGAAGGAATGCCCCTCCCCAAGGATCCTTCAAAGAAGGGAAATTTGAGGATAAAGTTCAACATCAAGTTCCCAACTCGGCTCAATGAAGAGCAGAAAGCAGGAATCAGAAAACTCTTGGCTGCCTAA | 741 | 0.4386 | MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKRTVYDQYGEEGLKGQVPPPDAGGAGTTFFSTGDMPGSFRFNPRNADDIFAEFFGFSSPFGGMGGRGGGGGMRSRKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNALTGYTVHLTTLDGRNLSIPINSVIHPNYEEVVPREGMPLPKDPSKKGNLRIKFNIKFPTRLNEEQKAGIRKLLAA* | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr3g1023 | 246 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Apr3g1023 | 246 | PANTHER | DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE | 171 | 245 | - | - | |
| Apr3g1023 | 246 | PANTHER | DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE | 135 | 171 | - | - | |
| Apr3g1023 | 246 | PANTHER | DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE | 1 | 134 | - | - | |
| Apr3g1023 | 246 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Apr3g1023 | 246 | SUPERFAMILY | Chaperone J-domain | 3 | 100 | IPR036869 | - | |
| Apr3g1023 | 246 | Pfam | DnaJ C terminal domain | 170 | 229 | IPR002939 | - | |
| Apr3g1023 | 246 | Gene3D | - | 125 | 172 | - | - | |
| Apr3g1023 | 246 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - | |
| Apr3g1023 | 246 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 170 | 238 | IPR008971 | GO:0006457|GO:0051082 | |
| Apr3g1023 | 246 | Gene3D | - | 173 | 245 | - | - | |
| Apr3g1023 | 246 | Gene3D | DnaJ domain | 3 | 124 | IPR036869 | - | |
| Apr3g1023 | 246 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - | |
| Apr3g1023 | 246 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Apr3g1023 | 246 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Apr3g1023 | 246 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Apr3g1023 | 246 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Apr3g1023 | 246 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 134 | - | - | |
| Apr3g1023 | 246 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 135 | 171 | - | - | |
| Apr3g1023 | 246 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 171 | 245 | - | - | |
| Apr3g1023 | 246 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr3g1023 | Apr-Chr3 | 25004881 | 25008518 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr3g1023 | 5 | 69 | C2H2 Transcription Factor Family | AT1G74250 | 39.130 | 2.05e-10 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr3g1023 | K09510 | - | sind:105175571 | 339.732 |
Event-related genes