Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1022 ATGGAGTGTGGTTCTGAAGGAGAGAAGAAGAAGAAGGCAGTGGAGGTAGATAATAAGACCAAGCGCAAAATGAAGACGGCTTCACAGTTGGAGGTTCTGGAGAAAACCTATGCTGTTGAGGCTTACCCTTCTGAGGCTTTGAGGGCTGAGCTATCTGTGAAGCTGGGACTGTCAGATCGTCAATTGCAAATGTGGTTCTGTCACCGGAGACTGAAGGACAGGAAGGCTGTGCCAGTTGCCAAGAAGCCGCAAAATGATTCGCCGCCGGCAGGGGCGGCTTTGGCAGCGGTGAGGGAGGGCGTTGAGCAAGTAGCAGTTGCTGAAGTTAGGCATGATTGTGGTTTGGCTTCTGGAATGAGGCCATTTGGTCATCTGGATTCACGGCGAGTTGTGCCGTGGCTTGGGATGGTGGCCTTCCCTAGGATGGAAGCTGGATTGCTAGCGATGGAGACTGGCAGTTACAATGATCCTAATCAGACCATAGCGGAGCTGCGAGCTATTGCTTTTGTGGAAAGACAGTTGGGGGAGCCGTTGAGAGAGGATGGACCTGTTCTGGGAATGGAATTTGATTCCTTGCCGCCAGGTGCATTTGGTGCACCAATAGGGGCGGTGACAATGGGGCAGCACAGGCAATCTGGAAGGCCTTTTGAGGCAAAAATTTATGAGCAACTGGACAAGGGTGTTTCAAGGACTCTGCATGAATATCAATTTATTCCAGAGAAACCAACAGTTAGAAATGAGGCATATGAGAGAGTTGCCCCTTCTATCCACTATAGTTCTCTTGATGGCGTTCCACATTCTAGGACTTTATTATCCAGTGAGCGATCTTTCCTGAATGGGAATGAATCTGCTCCTTATAGGTTTGGAATTCGAGGACAGATACCTGGTGTAAATATTTTGTCTCAGCAAGGTAGGCAGAATAATCTTTTCCTACCTGCTTCAGGAGAGAATGATGGTGTTTTGCAAAAGAACCAATTTGTTGATGTAACTGCTGACATTCATAGTGGGGCTCACCTTATAACTCTGATCAACAGCCCTCTAATGCCATCTGACAAGATGGTTATCCCTGATGAGGAACTATCAAGGTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGAATGCAACGCGAACTTGAAGCACAAGAGAAAAAAATTAGAAAAGATCTTGAAAAACGGGATATTCTAAGGCAAAAGAGAGAAGAACAAATAAAGAAAGAGATGGAGAGGCTTGAACGTGAAAGGCGGAAGGAAGAGGAAAGGTTATTGCGTGAAAGACAGCGAGAGGAGGAAAGGTACCAAAGAGAACAAAGGCGTGAACTGGAGCGGCAGGATAAGATTTTACAGAAGGAATCAATCAGAGCTGAGAAACTGAGACAGAGGGAAGAATCACGCAGGGAGAAAGAGGCAGCAAGGATCAAAGCTGCCAATGAGAGAGCTACTGCTCGCAGAATTGCTAAAGAATCGGTGGAACTTATTGAAGATGAACGTCTGGAACTCATGGAGTTAGCTGTAACAAAGAAGGGGCTTTCTTCAATATTGGCTCTTGACTATGAAACTATTCAAAATATTGAATTATATGGAGATGCACGGACATCTTTCCCACCCAAGTCTGTTCAGTTGAAAAGAATCATTTCTGTTCAACCTTGGTCAGATTCTGAAGAGAATGTAGGAAATCTTCTGATGGTTTGGAGGTTCTTGATTACCTTTGCTGATGCTCTTGGAATATGGCCATTTACCTTGGATGAACTTGTACAAGCTTTTCATGACCATGATCCAAGGTTGTTAGGTGAGATTCATATCGCACTATTGAGGTCCATTATAAAAGATATTGAAGAAGTTGTAAGAACACCGTCTACTGGATTAGCAGCTAACCAAAACAGTGTTGCCAACTCTGGTGGGGGGCATCCACATGTAGTTGAAGGGGCATGTATGTGGGGTTTTGATATAAGAAGTTGGCAGCAACATTTAAATCCATTAACATGGCCAGAGATTTTGCGACAATTTGCTTTGTCAGCAGGATTTGGGCCCCAATTGAAGAAACAGAATATTGAGCAGGTGCACCCTTGCAATAATAATGAGGGCAATGATGGTAGAGATATAATTTCTAATCTACGCAGTGGAGCAACTGTTGAAGATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAACCCAAGAAGATCTAGGCATTGCTTGACACCTGGAACTGTTAAATTTGCTGCATTTCATGTTCTTTCTCTTGAAGGAAGCAAAGGCCTTAATATATTGGAAGTTGCAGAAAAGATTCAGAAATCTGGACTTCGTGATCTTACAACAAGCAAAACACCAGAGGCTTCTATAGCTGCTGCTTTGTCTAGGGATACAAAACTATTTGAAAGGACAGCTCCTTCAACATATTGTCTACGTTCTGCATATAGAAAGGACCCAGCTGATTCTGAGGCAATTTATTCCGCTGCCAGGGAAAGAATCACGATATTCAAAAGTGGATTTGTGAATGCAGAGGAAGCTGATGATGGTGAAAGGGATGCAGATTCTGAGAGTGATGTGGCAGAAGATCCTGAAATTGATGATTTAGGAACTGAAATAAATTCAAAAAAGGAGAGTTCAAATTATGAGGAATCAAATGCAAACTCTGCGATGAGATATAGAATGGACAATGGTTTAGATGTTGATGAAAGCATTCCAGGTGAACCATGGGTACAAGCGCTTACAGAGGGAGAGTACTCGGACCTTAGTGTAGAGGAGCGTCTTCATGCTCTTGTTGCTTTGATTGGTGTGGCAACTGAAGGAAATACAATTCGTGTTGTACTTGAGGAACGTCTAGAAGCAGCAAATGCTTTAAAAAAGCAGATGTGGGCAGAAGCACAGCTTGATAAACGCCGTGTCAAAGAGGATTACTTTGTTAAGATGCTGTCTGTCTCATATTTGGGCAATAAGAATGAGTTACCTGTTGTGTTTCCCTCAGTAGAGCATAGACAGAGCCCAGTGCTTACTGTTGACAACAACAATGATAAGACTGTGCTCACTTCCAATGACCAGCATAAACAGCAGGATGAACTACGGGAAAATCAAAATCATCTTCAGAGTTCCCCGCCAGAAGTCAACATGCAGATGCAAGATTGTTCAACTGGCCCAGATAGTTATTCTTTCCAACAATCAGGATATGCTGCTGAAAAATCAAGATCAAATTTAAAGTTATACATTGGCCACTTGGCAGAGCAAACTTACACGTATAGGTCATTACCTCTTGGTTTGGATCGAAGACATAATTGTTATTGGCAATTCATCACATCTTCTCAAAATGATCCAGGTTGTGGCAGGATTTTTGTGGAGTTGCATGATGGTTGTTGGAAGCTGATTGATTCTGAAGAGGGTTTTGATGCTTTATTGGCTTCTTTGGATGTACGTGGGATCAGGGAGTCCCACTTGCATATGATGTTGCAAAGAATCGAGATGTCGTTCAAGGAATCTGTTAGAAGGAATGTACAAAATGTTAACATGAGAATGCAAAATGGAGATACTGTTGAGAGACTCAAGATAGAAACTGTTGAAATGGCTTCAAAACCAGATTGCAGTGATTATCATTGTCCTACTTCTGTATGCATTGATAACTTGGATGCATCAGAAATGTCAACATCTTTTGTGGTCCAGCTTGGAACAAACGAAGCTGATAACACAGATGCTTTTATGAGATATTGGGACTTTGAGAAATGGATGCAAAAGGAATGCCTAAATTCCTCAGTTTTATGTGCAATGAAGTTTGGGAAGAAGAGGTGCCGCCAACTGCTGTCCATATGTGATTTGTGCCATCATGTCTATTTCTCTAGTGGACTTCCTTGTCCTTCCTGCAGTAGAACCTTCAGTGCTTGTAAGAGCAACTTTAGTTCTTCTGAACATCTTCATTCTAAAAGCAAAGTGGAGATTGGCACTGATTGTTTTCACGTTTCATCCTTTCTTCCTTTGAGGATGAGGTTGCTCAAAATGTTCTTGTCAATTGTTGAGGTAACCCTTCCCCAGGAAGCTTTGCAACCTCTTTGGACAGACAACTACAGGAAATCTTGGAGTACAAAGTTGGATGCTTTCTCATCAAATGAAGACCTTCTTCAGATATTTACTGCATTGGAAGGTGCTATAAAGAGGGATTATTTGTCTTCGAACTATGAAACAACCAGTGAGCTGTTAAGTTCAATTAAATCTCCTGGATTTCCCACTAATGATTCCATTGATGGTGAAAGGATACCTGTACTTCCATGGGTTCCATATACAACAGCTGCTGTAGCTCTAAGGCTCTTGGAACTTGATGCATGCATCTTTTACACCTCACAGCAGAAGCTGGAGTCTCAGAAGAATAAGAAAATTGGAATTGTTCTGAAGCTTCCATCAAAACATGCTTCTGCCAAAAGTTCCTACAATGCTGGTGCAATTGAATCTTCACATCAGGCTGAACGTACTGCCGAAAAATGGGTTGATCTGGGTGCTGGCCTTCCACGCCACAGCAGAGGACAAAGGACCAAACAAGGCTGTGGCGGTTCTCATGATGGAAGATTGTCAAAAGGGAGGGTTGATAGTTCAAGATCTGATCATAGAAAGAGAAGGATTACCTCTGGCAGCAGGAAAATGGGGAAATTGCTAGGATGGAAAGGCAAACCTGGTGGACAAGTAGGAAATGTTCGTGGTCGTCGGAGCACTAGAAGCAGACAGAAAGCGCCAGCCAAGGTGGGTTTTATCACCCGTGAGAGGGATACCCCAGAAGATATTGTGGAAAAACCACCTGGTATATTTGTCAGAGAGGATGTGAATCAAGGGAAACTGGAATCTACTGCTCTAAATGCTAGTAGTCCAGAGAGATCAGGCTATGAAGATGATATTTATCAAGCAATAGGTGATGAGGGTGATTATTTGGTGGATAATAATGATGGATGTCAGGGTGGATTTAGTGGGAAGTCCGAGAACTTAGAAGAGAGCCACTATAATGTACATGTTGATTACGATGATGAAGATAGGCAAATGGATCTTGATGTTGAAGATTACATAATAAGGTGA 5043 0.4267 MECGSEGEKKKKAVEVDNKTKRKMKTASQLEVLEKTYAVEAYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRKAVPVAKKPQNDSPPAGAALAAVREGVEQVAVAEVRHDCGLASGMRPFGHLDSRRVVPWLGMVAFPRMEAGLLAMETGSYNDPNQTIAELRAIAFVERQLGEPLREDGPVLGMEFDSLPPGAFGAPIGAVTMGQHRQSGRPFEAKIYEQLDKGVSRTLHEYQFIPEKPTVRNEAYERVAPSIHYSSLDGVPHSRTLLSSERSFLNGNESAPYRFGIRGQIPGVNILSQQGRQNNLFLPASGENDGVLQKNQFVDVTADIHSGAHLITLINSPLMPSDKMVIPDEELSRFQRKRKNEEARMQRELEAQEKKIRKDLEKRDILRQKREEQIKKEMERLERERRKEEERLLRERQREEERYQREQRRELERQDKILQKESIRAEKLRQREESRREKEAARIKAANERATARRIAKESVELIEDERLELMELAVTKKGLSSILALDYETIQNIELYGDARTSFPPKSVQLKRIISVQPWSDSEENVGNLLMVWRFLITFADALGIWPFTLDELVQAFHDHDPRLLGEIHIALLRSIIKDIEEVVRTPSTGLAANQNSVANSGGGHPHVVEGACMWGFDIRSWQQHLNPLTWPEILRQFALSAGFGPQLKKQNIEQVHPCNNNEGNDGRDIISNLRSGATVEDAVAIMQEKGLSNPRRSRHCLTPGTVKFAAFHVLSLEGSKGLNILEVAEKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCLRSAYRKDPADSEAIYSAARERITIFKSGFVNAEEADDGERDADSESDVAEDPEIDDLGTEINSKKESSNYEESNANSAMRYRMDNGLDVDESIPGEPWVQALTEGEYSDLSVEERLHALVALIGVATEGNTIRVVLEERLEAANALKKQMWAEAQLDKRRVKEDYFVKMLSVSYLGNKNELPVVFPSVEHRQSPVLTVDNNNDKTVLTSNDQHKQQDELRENQNHLQSSPPEVNMQMQDCSTGPDSYSFQQSGYAAEKSRSNLKLYIGHLAEQTYTYRSLPLGLDRRHNCYWQFITSSQNDPGCGRIFVELHDGCWKLIDSEEGFDALLASLDVRGIRESHLHMMLQRIEMSFKESVRRNVQNVNMRMQNGDTVERLKIETVEMASKPDCSDYHCPTSVCIDNLDASEMSTSFVVQLGTNEADNTDAFMRYWDFEKWMQKECLNSSVLCAMKFGKKRCRQLLSICDLCHHVYFSSGLPCPSCSRTFSACKSNFSSSEHLHSKSKVEIGTDCFHVSSFLPLRMRLLKMFLSIVEVTLPQEALQPLWTDNYRKSWSTKLDAFSSNEDLLQIFTALEGAIKRDYLSSNYETTSELLSSIKSPGFPTNDSIDGERIPVLPWVPYTTAAVALRLLELDACIFYTSQQKLESQKNKKIGIVLKLPSKHASAKSSYNAGAIESSHQAERTAEKWVDLGAGLPRHSRGQRTKQGCGGSHDGRLSKGRVDSSRSDHRKRRITSGSRKMGKLLGWKGKPGGQVGNVRGRRSTRSRQKAPAKVGFITRERDTPEDIVEKPPGIFVREDVNQGKLESTALNASSPERSGYEDDIYQAIGDEGDYLVDNNDGCQGGFSGKSENLEESHYNVHVDYDDEDRQMDLDVEDYIIR* 1681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1022 1680 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 896 938 IPR028942 -
Apr3g1022 1680 Pfam HB1, ASXL, restriction endonuclease HTH domain 735 803 IPR007759 GO:0006355
Apr3g1022 1680 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 881 IPR044977 GO:0006357
Apr3g1022 1680 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 887 1674 IPR044977 GO:0006357
Apr3g1022 1680 CDD homeodomain 19 75 IPR001356 GO:0003677
Apr3g1022 1680 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1079 1150 IPR028941 -
Apr3g1022 1680 SUPERFAMILY Homeodomain-like 17 75 IPR009057 -
Apr3g1022 1680 Coils Coil 360 480 - -
Apr3g1022 1680 MobiDBLite consensus disorder prediction 1494 1571 - -
Apr3g1022 1680 SMART testlast3 553 612 IPR018501 -
Apr3g1022 1680 Gene3D - 14 81 - -
Apr3g1022 1680 ProSiteProfiles HARE-type HTH domain profile. 735 804 IPR007759 GO:0006355
Apr3g1022 1680 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 881 - -
Apr3g1022 1680 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 887 1674 - -
Apr3g1022 1680 MobiDBLite consensus disorder prediction 837 857 - -
Apr3g1022 1680 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Apr3g1022 1680 Pfam DDT domain 554 609 IPR018501 -
Apr3g1022 1680 MobiDBLite consensus disorder prediction 1515 1530 - -
Apr3g1022 1680 MobiDBLite consensus disorder prediction 834 875 - -
Apr3g1022 1680 MobiDBLite consensus disorder prediction 1023 1043 - -
Apr3g1022 1680 ProSiteProfiles DDT domain profile. 553 612 IPR018501 -
Apr3g1022 1680 MobiDBLite consensus disorder prediction 414 439 - -
Apr3g1022 1680 Pfam Homeodomain 19 75 IPR001356 GO:0003677
Apr3g1022 1680 MobiDBLite consensus disorder prediction 1000 1043 - -
Apr3g1022 1680 SMART HOX_1 18 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1022 Apr-Chr3 24992574 25004464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1022 1 1452 Homeobox Transcription Factor Family AT5G44180 50.723 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Apr3g1022 WSD 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1022 - - gmx:100797480 2421.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1022 3 24992574 25004464 Apr3g1022 3 24992574 25004464 ECH