Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1020 ATGTTTCAGTTGCTTCTGTTCCTCCTCTTCTTTCTCTCTCCACCGCCACTCTCTCTCTCTCTGAACCAAGACGGTCTCTTCCTCCTCAAAGCCAGGCGCCAACTCTCCGACCCCAACAATTCTCTCTCTTCGTGGAACTCCCGCGACGCCACGCCATGCCGGTGGCGCGGCGTCACGTGCGACCCTGTCTCCGGCGCCGTCACCACCGTCAAACTCATCAACGCCTCCCTCTCCGGCTCCTTCCCCGCCTCCTTCTGCCGCCTCCCCTCTCTCTCGTTTCTCATTCTCTCTTACAACCTCATCAACTCCACCCTTTCCGGCGATGCTGTCGCCGGGTGCCGCAGCCTCCGCCACCTCGACCTTTCCCAAAATGCCCTTGTGGGTCTCATTCCTGACACCCTCTCCCAAATCACCACCCTTGAATCCCTTGACCTCTCCAGCAACAATCTCTCCGGCGACATTCCGGCGACCCTCGCCACCCTCCCCCATCTCGAAACACTCATCCTCGTTTACAACCTCTTCAACGGAACAATACCCAATTTTCTCGGTAACATCACTTCGTTGAAAGACCTTCAACTCGCTTATAACTCGTTCAAACCGGGTCCGTTACCGAGTGAATTCGGTAACCTCACCAACCTTGAAAACCTCTGGCTCGCACAGTGCAACCTAGTGGGTCCCATTCCACACTCTCTCGGTAACCTCGCTCGCTTAACGAACCTTGACTTGTCAGCAAATAGACTCACTGGTTCCATTCCACAATCGTTCACGCGCTTGAAGCGCGTGAACCAGATCGAGCTCTACCAGAACTCGCTCTCCAGTGAGTTACCCACTGGAATGTCGAACATGACGAATCTCCGACTCTTCGACGCGTCAATGAACGAGTTGACTGGGACGATTCCCGACGAGTTAAGCGAGTTGCCACTCGCCTCGCTCAATTTGTACGAGAACAATCTCGAAGGGTCGTTGCCGGCGAGCATTGCTCGTTCTCCCAACCTCTATGAACTCAAATTGTTCACGAACGGACTCGTTGGGACGTTGCCGAGTGATTTAGGGAGTAACTCGCCCTTGAATCACATTGATGTTTCGAACAACAAATTTACCGGCGGGATTCCGGCGAACCTATGCCGGCGAGGACAGTTGGAGCAATTCATCTTGATGTACAATTCGTTTTCTGGGGAAATCCATGAAAATTTTGGGAACTGCAAGAGCTTAAAGAGGGTTCGGTTAAGGAACAATAACCTCTCAGGCACGGTCCCCGAAGCGTTTTGGGGTCTACCCCATTTGGAATTGCTCGAGCTTCTCGAGAATTCTCTTTCTGGGCACATTTCTAATGCGATTTCCGGTGCTTATAAACTTTCAAGTTTGTTGCTTTCGAATAACCGGTTTTCAGGGTCGATTCCTGATGAATTTGGGTTGTTGAATGGTCTTTTGAAGTTTGCTGCTAGCCATAATGATCTTTCGGGTCGGATTCCGCAGAGTATGTCAAATTTGGGGCAGTTGGTTAATCTTGATCTTAGTTATAACCAACTTTCTGGTGATCTTTTTGGGGGAATTGGTCATTGGACTAAGCTCACTGAACTTAATTTGGCAAATAATAAGTTTGATGGTAAAATTCCAAGAGAATTAGGAAGCTTGTCTTTGCTGAATTCTCTTGATCTTTCACTCAACAATTTTTCTGGTGAAATCCCACTCCAGTTGCAGAATTTGAAGCTCTCTGAGATGAATTTGTCTTACAACCATCTATCTGGTGTTATTCCTCCCCTTTATGCCAATGACAAGTATAAAATGAGTTTTGTTGGAAATCCTGGGCTCTGTGGATATCACTCTGGGCTTTGTTATGGCTCTGGTAAGAGTAAGAACCGGAGCTATGTGTGGATTTTGTGGTCCATATTTGTGATTGCTGGAGTTGTGTTCATTGTTGGGGTGGTCTGGTTTTACTTGAAGTGCAGAAAAGTGAGGAAATTGAAGAAGGGTTTCAGCACTTCAAGGTGGAGGTCTTTTCATAAGTTGGGGTTTAGTGAGTTTGAGGTTGCTAAATTGCTGAATGAAGACAATGTAATAGGAAGTGGAGCATCTGGGAAGGTCTACAAGGTGGTGCTTAGCAATGGTGAGGTGGTGGCAGTGAAGAAATTGTGGGGAGTATCTGCGAGTGCGAATGAAAATGTTGCTTCTGGAAAAGATGAATTTGAGGCTGAAGTTGAGACGCTGGGAAGGATTAGGCACAAAAATATTGTAAAGTTGTGGTGTTGTTGCAATAATGGTGATCACAGACTTCTGGTTTATGAGTATATGCCAAATGGGAGCTTGGCGGATGTGTTAAAGGGTTGCAAGAAAAATCGGTTGGATTGGCCCACTAGGTACAAAATTGCTATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCATGATTGTGTCCCACCCATTGTTCACAGGGACGTGAAATCTAACAACATATTGCTGGATGGAGAGTTTGTGGCAAAACTCGCTGATTTTGGGGTTGCCAAAATGGTTACAGGAGCCAGCCAAGGTGCAGAATCAATGTCTGTGATTGCAGGATCTTATGGCTACATTGCACCAGAATACGCGTATACTCTTCGGGTGAATGAAAAGAGTGATATCTATAGCTTTGGCGTGGTGATTTTGGAGTTGGTAACTGGAAGACCCCCCATTGATCCAGAATATGGTGAAAATGATCTTGTGAAGTGGGTTTCCTCTGCATTGGAAAATGAAGGAATGGATCATGTGATTGATCCTACTCTCGACTCCAAATACATGGAAGAAATCAGCAAGGTATTGAACGTGGCGCTTCATTGTACCAGTTCCCTTCCTATATCTCGCCCTACAATGAGGAATGTAGTGAAAATGCTTCAAGAAGTAACAACAGCTCCCAAATACAAAAATACTAACGATGATAAAGTCTCTTCATACCATGAAGGTCCATCTTATAGTATTAGGGAAGCATAG 2964 0.4669 MFQLLLFLLFFLSPPPLSLSLNQDGLFLLKARRQLSDPNNSLSSWNSRDATPCRWRGVTCDPVSGAVTTVKLINASLSGSFPASFCRLPSLSFLILSYNLINSTLSGDAVAGCRSLRHLDLSQNALVGLIPDTLSQITTLESLDLSSNNLSGDIPATLATLPHLETLILVYNLFNGTIPNFLGNITSLKDLQLAYNSFKPGPLPSEFGNLTNLENLWLAQCNLVGPIPHSLGNLARLTNLDLSANRLTGSIPQSFTRLKRVNQIELYQNSLSSELPTGMSNMTNLRLFDASMNELTGTIPDELSELPLASLNLYENNLEGSLPASIARSPNLYELKLFTNGLVGTLPSDLGSNSPLNHIDVSNNKFTGGIPANLCRRGQLEQFILMYNSFSGEIHENFGNCKSLKRVRLRNNNLSGTVPEAFWGLPHLELLELLENSLSGHISNAISGAYKLSSLLLSNNRFSGSIPDEFGLLNGLLKFAASHNDLSGRIPQSMSNLGQLVNLDLSYNQLSGDLFGGIGHWTKLTELNLANNKFDGKIPRELGSLSLLNSLDLSLNNFSGEIPLQLQNLKLSEMNLSYNHLSGVIPPLYANDKYKMSFVGNPGLCGYHSGLCYGSGKSKNRSYVWILWSIFVIAGVVFIVGVVWFYLKCRKVRKLKKGFSTSRWRSFHKLGFSEFEVAKLLNEDNVIGSGASGKVYKVVLSNGEVVAVKKLWGVSASANENVASGKDEFEAEVETLGRIRHKNIVKLWCCCNNGDHRLLVYEYMPNGSLADVLKGCKKNRLDWPTRYKIAIDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGEFVAKLADFGVAKMVTGASQGAESMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPIDPEYGENDLVKWVSSALENEGMDHVIDPTLDSKYMEEISKVLNVALHCTSSLPISRPTMRNVVKMLQEVTTAPKYKNTNDDKVSSYHEGPSYSIREA* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1020 987 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Apr3g1020 987 Pfam Leucine rich repeat 236 295 IPR001611 GO:0005515
Apr3g1020 987 Pfam Leucine rich repeat 380 438 IPR001611 GO:0005515
Apr3g1020 987 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Apr3g1020 987 Gene3D Phosphorylase Kinase; domain 1 664 763 - -
Apr3g1020 987 Gene3D Transferase(Phosphotransferase) domain 1 764 980 - -
Apr3g1020 987 Gene3D Ribonuclease Inhibitor 21 307 IPR032675 -
Apr3g1020 987 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 4 977 - -
Apr3g1020 987 SMART LRR_typ_2 497 517 IPR003591 -
Apr3g1020 987 SMART LRR_typ_2 137 161 IPR003591 -
Apr3g1020 987 SMART LRR_typ_2 234 257 IPR003591 -
Apr3g1020 987 SMART LRR_typ_2 88 112 IPR003591 -
Apr3g1020 987 SMART LRR_typ_2 282 306 IPR003591 -
Apr3g1020 987 SMART LRR_typ_2 521 545 IPR003591 -
Apr3g1020 987 SMART LRR_typ_2 401 424 IPR003591 -
Apr3g1020 987 SMART LRR_typ_2 113 136 IPR003591 -
Apr3g1020 987 Pfam Leucine Rich Repeat 523 545 IPR001611 GO:0005515
Apr3g1020 987 ProSiteProfiles Protein kinase domain profile. 681 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1020 987 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 4 977 - -
Apr3g1020 987 SUPERFAMILY L domain-like 49 301 - -
Apr3g1020 987 SMART serkin_6 681 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1020 987 SUPERFAMILY RNI-like 265 583 - -
Apr3g1020 987 MobiDBLite consensus disorder prediction 964 987 - -
Apr3g1020 987 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Apr3g1020 987 ProSiteProfiles Leucine-rich repeat profile. 139 162 IPR001611 GO:0005515
Apr3g1020 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Apr3g1020 987 PRINTS Leucine-rich repeat signature 116 129 - -
Apr3g1020 987 PRINTS Leucine-rich repeat signature 137 150 - -
Apr3g1020 987 Gene3D Ribonuclease Inhibitor 308 613 IPR032675 -
Apr3g1020 987 SUPERFAMILY Protein kinase-like (PK-like) 681 957 IPR011009 -
Apr3g1020 987 Pfam Protein kinase domain 683 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1020 Apr-Chr3 24981045 24984747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1020 16 977 Receptor kinase-like Gene Family AT1G28440 59.365 0.0 1141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr3g1020 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1020 - - ccaj:109805711 1408.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1020 3 24981045 24984747 Apr3g1020 3 24981045 24984747 ECH
Apr1g1460 1 24019695 24024352 Apr3g1020 3 24981045 24984747 ECH