Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1019 ATGACTCAGTGCAAGGACCCTGAAAACAATCATCATAGCATCATAGTGGAGGGACGAAAGGATAGCTTAATTAGAACTTGTCCTACATGTGGTCATCATATCAAATGCCAAGAACAGGCTGGTGGAATTCATGATTTACCTGGACTACCTGCTGGAGTGAAGTTTGATCCCACAGATCAAGAGATTCTTGAACACTTGGAAGCGAAAGTGCGCTCTGATATTCATAAACTTCACCCCCTAATTGATGAGTTCATTCCCACTCTTGAAGGCGAGAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCACAGATGGCCTAATTCGCCATTTCTTTCATCGTCCTTCCAAGGCATATACAACAGGAACAAGGAAAAGAAGAAAGGTGCACTCCGATGAGGATGGTAGTGAAACCCGTTGGCACAAAACAGGTAAAACTAGGCCAGTCTACAACAATGCCAAGTTGAAAGGGTACAAGAAAATTCTTGTACTCTACACTAACTATGGAAAGCAAAAAAAGCCTGAGAAAACGAATTGGGTCATGCACCAATACCACCTTGGAAGTGATGAAGAGGAGAAGGAAGGGGAGTTAGTGGTCTCCAAAGTTTTCTACCAAACACAGCCTAGACAATGTGGTTCCCTCATGAAAGATTCATCAATTCCTGGGAAACTTATGAAGGGTCAAGCCGTGCATGAGGTAATCAATAACAAAAACAATAATAATGGGTTTGTGAAATACTACCATCCAAATTTCATATCATTTGATCAAGGGGGGCAACATAGACCTAGCAGTGCTCAAGTAATTTCCCACCATTTTCCTGATCATGGTGCTTCTTTTAATATTCCTTGA 858 0.4184 MTQCKDPENNHHSIIVEGRKDSLIRTCPTCGHHIKCQEQAGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSTDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNNAKLKGYKKILVLYTNYGKQKKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSLMKDSSIPGKLMKGQAVHEVINNKNNNNGFVKYYHPNFISFDQGGQHRPSSAQVISHHFPDHGASFNIP* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1019 285 ProSiteProfiles NAC domain profile. 49 208 IPR003441 GO:0003677|GO:0006355
Apr3g1019 285 Gene3D NAC domain 58 212 IPR036093 GO:0003677|GO:0006355
Apr3g1019 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 282 IPR044799 GO:0003700
Apr3g1019 285 MobiDBLite consensus disorder prediction 128 147 - -
Apr3g1019 285 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 282 - -
Apr3g1019 285 MobiDBLite consensus disorder prediction 123 149 - -
Apr3g1019 285 Pfam No apical meristem (NAM) protein 50 189 IPR003441 GO:0003677|GO:0006355
Apr3g1019 285 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1019 Apr-Chr3 24971525 24974574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1019 25 222 NAC Transcription Factor Family AT4G28500 80.402 2.36e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr3g1019 NAM 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1019 - - gmx:100797459 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1019 3 24971525 24974574 Apr3g1019 3 24971525 24974574 ECH
Apr1g1463 1 24060128 24064663 Apr3g1019 3 24971525 24974574 ECH