Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1017 ATGGATGAAGGAGAAATCACCAATGGTTTCCCTCCAAACCCAACTGGTGCTGCATCCAACAAGAATCCTCCAGTTTTGAAGAGGAAGAGAAACCTCCCAGGAAATCCAGATCCTGAAGCTGAGGTCATAGCCTTATCACCAAAGACTCTTATGGCTACCAACAGATTCTTGTGTGAAACATGTGGGAAGGGTTTTCAAAGGGATCAAAATCTTCAACTCCATCGACGTGGACACAACCTTCCTTGGAAGCTTAAGCAAAGGACGAGCAAGGAAGCAAGGAAAAGGGTTTATGTGTGCCCGGAGAAGACTTGTGTACACCACGATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCATGGAGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAATCAGATTGGAAAGCTCATTCAAAGACCTGTGGCACCAGAGAATATAAATGTGACTGTGGAACCATCTTTTCAAGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGTGATGCCTTGGCCGAAGAAACAGCTAGGGTAAATGCAGCATCAGACATGAACACCTCTTTAGGGGGTAACATTGGTTACAACATAATGGGAACACCATCCCTAGGCCCTAATATGGCAACCCATTTTTCATCAATTTTCAAGCCAGTTTCAAGCATTGACGAAACAACTAATCCAACATCTAAAGGACTTTCCCTTTGGATGGGTCAAACATCTTCTCAGGCTCAAGAAACAATGGCTAATGGCAATTTGCGTGAGATTCATCAACTTGAAATATCAACGACAAACTCAGAAACAATATATTGTGGAACCCCACTTGTCCAAAGCTCAAATCTCCCACCCTCTAATTATCACCTAAATTGGGTGTTTGGAACAAAGCTTTCCTCCAATAACAGCCAAGAGCTAACCAGTAATACTACCTCACTTCCACTAGGCAATAATACAAGTGTTCCTTCCTTGTATAGCTCCCAACACCAACCTCATCAAACATCTTCATTGGCAAACATGTCAGCCACAGCTTTGCTGCAAAAAGCTGCTCAAATTGGAGCAACCTCAAGTGACCCATTATGGCTTGGAAGCCTAGGTTTGAAATGCAGTTACAATCAAGGACAAGATGGGGATAACAAGTTCAGTATGTACGGTTCAAGTTTAGTGCTCACAAGTGTTGGGAACAAGGCAGAGAACTCTGCATGTGACTTGTCACAAATGCTCCATGCCAAACGCAGACACGTGCAGAATGAGGAAAATGGAGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGCCACCCTTTATCAATCAAGGGGAGGAAAAGGTGGGAATTGAGTGCTTGA 1383 0.4403 MDEGEITNGFPPNPTGAASNKNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEARKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASDMNTSLGGNIGYNIMGTPSLGPNMATHFSSIFKPVSSIDETTNPTSKGLSLWMGQTSSQAQETMANGNLREIHQLEISTTNSETIYCGTPLVQSSNLPPSNYHLNWVFGTKLSSNNSQELTSNTTSLPLGNNTSVPSLYSSQHQPHQTSSLANMSATALLQKAAQIGATSSDPLWLGSLGLKCSYNQGQDGDNKFSMYGSSLVLTSVGNKAENSACDLSQMLHAKRRHVQNEENGGGQTRDFLGVGVQTICHPLSIKGRKRWELSA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1017 460 PANTHER F-BOX ASSOCIATED PROTEIN 19 445 - -
Apr3g1017 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Apr3g1017 460 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Apr3g1017 460 MobiDBLite consensus disorder prediction 1 38 - -
Apr3g1017 460 Gene3D Classic Zinc Finger 35 108 - -
Apr3g1017 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 445 - -
Apr3g1017 460 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Apr3g1017 460 Gene3D Classic Zinc Finger 125 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1017 Apr-Chr3 24959389 24961936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1017 22 452 IDZ Gene Family AT1G03840 52.811 5.13e-144 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g1017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1017 K25870 - gmx:100790620 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1017 3 24959389 24961936 Apr3g1017 3 24959389 24961936 ECH