Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1010 ATGGAATTCCAAAGTGAAGAGAATGCCACCAAGCTTCTTAAAGCCCAAGCCCATGTATGGAACCACATTTTCAGCTACATCAATTCCATGTCCCTAAAATGTGCAATTGACTTAGACATACCAGATATCATACACAAGTATGGCCAACCCATGCCACTCTCACAACTTATTGCCTCACTATCAATTCATCCATCCAAAACCGATTGTATCTACCGTTTGATGCGAATGTTGATCCATTCTGGCTTCTTTTCTCAACAAAAGATCAACGAGAATGAGCTAGAAATGGGTTATGTACTAACTGATTCATCTGCTTTATTGCTTAAGGACAGTCCCTTAAGTATGGCACCTTTTCTGCAAGCCATGGTTGATCCAATTTTGACAAAGCCATGGTATCAATTGCCTACATGGTTCAAAAGTGATGATCCTACACCGTTTCACACAGCCCATGGAATGAAAATATGGGATTATTGTGGCATTGAGCCAAAACTTAATGAACTTTTCAATGATGCAATGGCAAGTGACACTCATTTGATTGCCAGTGTGGTGGTTGAGAAGTGCAAGGAGGTGTTCAAAGGCTTGGAGTCATTGGTAGATGTTGGTGGAGGTACAGGGACTATGGCAAAGGCAATTGCCAAATCATTCCCACAGCTTGAGTGCACAGTATTTGATCTCCCACACGTTGTTGCTGGTTTGCAAGGAAAAGACAACTTGAAATATGTTGGTGGGGACATGTTTGAGTCAGTTCCTCCTGCTGATGCCATTTTGTTGAAGTGGATCCTGCATGACTGGAATGATGAGCAGTGTCTGAAAATACTTAAGAATTGCAAGGAAGCAATTAAGAACAAAGGCAAAGAACAAAAGGTGATCATCATAGACATGGTGATGGAGGACGGAAAACGAGATGATGAATCAATTGAAACACAGCTCTTTGTTGATGGTGTTGTGATGGTGTTGTACCCTGGAAAAGAGAGAAATGAGAAAGAATGGGCCAAACTGATTTTCTCAGCTGGTTTCAGTGACTACAAAATAACTCCAGTGTTGGGTTTAAGGTCTCTCATTGAGATTTATCCTTAA 1074 0.4115 MEFQSEENATKLLKAQAHVWNHIFSYINSMSLKCAIDLDIPDIIHKYGQPMPLSQLIASLSIHPSKTDCIYRLMRMLIHSGFFSQQKINENELEMGYVLTDSSALLLKDSPLSMAPFLQAMVDPILTKPWYQLPTWFKSDDPTPFHTAHGMKIWDYCGIEPKLNELFNDAMASDTHLIASVVVEKCKEVFKGLESLVDVGGGTGTMAKAIAKSFPQLECTVFDLPHVVAGLQGKDNLKYVGGDMFESVPPADAILLKWILHDWNDEQCLKILKNCKEAIKNKGKEQKVIIIDMVMEDGKRDDESIETQLFVDGVVMVLYPGKERNEKEWAKLIFSAGFSDYKITPVLGLRSLIEIYP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1010 357 PANTHER O-METHYLTRANSFERASE 7 357 IPR016461 GO:0008168
Apr3g1010 357 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
Apr3g1010 357 Gene3D - 2 106 IPR036388 -
Apr3g1010 357 CDD AdoMet_MTases 196 284 - -
Apr3g1010 357 PANTHER ORCINOL O-METHYLTRANSFERASE 7 357 - -
Apr3g1010 357 SUPERFAMILY "Winged helix" DNA-binding domain 11 111 IPR036390 -
Apr3g1010 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Apr3g1010 357 Gene3D Vaccinia Virus protein VP39 107 357 IPR029063 -
Apr3g1010 357 Pfam O-methyltransferase domain 130 339 IPR001077 GO:0008171
Apr3g1010 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Apr3g1010 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 355 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1010 Apr-Chr3 24897644 24899279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1010 30 343 Monolignol Biosynthesis Gene Families AT5G54160 35.423 1.10e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1010 - K16040 gmx:100794122 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1010 3 24897644 24899279 Apr3g1010 3 24897644 24899279 ECH
Apr1g1468 1 24128836 24129729 Apr3g1010 3 24897644 24899279 ECH