Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1009 ATGGAAACCCAAATTGAAGAGTATTCTGCCAAACTTCTTCAAGCTCAAACCCACATATGGAATCACAGTTTGAGCTTCATAAATTCCATGTCCCTTAAATGTGCAATCGATTTGGGCATACTAGATACCATACATAAGTATGCCCAACCCATGCCACTCTCACAACTTGTTAATTCATTACAAATTCACCCATCCAAAACAAATTGCATCTACCGCTTGATGCGAATTTTGACCCATTATGGCTTCTTGTCTCAAAAAAATATTATTGAGAATGAGTCAGAAGTGGGTTACTTGATTACAGATTCATCTGCTTTATTGCTTAAGGAAAATCCCTTGAGTGTGACACCCTTTTTGCAAGCCATGCTTGATCCAATTATGACAAAGCCATGGTATCAATTACCAACATGGTTCAAAAATGATGATGTTACATCATTTAACACTACACATGGAATGACATTTTGGGGTTATGCTAATAATGACCCAAAACTTAACAATCTTTTCAATGATGGGATGGCAAGTGACGCTCGATTGATTGCTAGTGTGGTGATTGAAAAATGCAAAGGCGTGTTCAACAACTTGGCCTCACTGGTAGATGTTGGTGGAGGCACAGGGACTATGGCACAGACATTTGCTAAATCATTCCCACAACTAGAGTGCACTGTATTTGATCTCCCTCATGTTGTTGCTGGCTTGCAAGGGAGTCAGAACTTAAATTATGTTGGAGGGGACATGTTTAAGTCAATTCCTCCTGCTGAGGGCATCTTATTAAAGTGGATATTGCATGACTGGAATGATGAGGAGTGTGTGAAAATACTGAAAAATTGCAAAGAGGCAATCACAAGCGAAGGCGAAAATCGAAAGGTGATTATCATAGACATCGTGATGGGGAATGAGAAGGGAGATAGCAATGAATCAATCGAAACACAGCTATTATTTGATATGCTTATGATGGCATTGCTCACCGGAAAGGAGAGAAATGAAAAAGAATGGGCTAAACTGATTTATTCTGCTGGTTTCAGTGATTACAAGATAACTCCAGTGCTGGGTGTAAGATCTCTTATTGAGGTCTTTCCATAA 1077 0.3928 METQIEEYSAKLLQAQTHIWNHSLSFINSMSLKCAIDLGILDTIHKYAQPMPLSQLVNSLQIHPSKTNCIYRLMRILTHYGFLSQKNIIENESEVGYLITDSSALLLKENPLSVTPFLQAMLDPIMTKPWYQLPTWFKNDDVTSFNTTHGMTFWGYANNDPKLNNLFNDGMASDARLIASVVIEKCKGVFNNLASLVDVGGGTGTMAQTFAKSFPQLECTVFDLPHVVAGLQGSQNLNYVGGDMFKSIPPAEGILLKWILHDWNDEECVKILKNCKEAITSEGENRKVIIIDIVMGNEKGDSNESIETQLLFDMLMMALLTGKERNEKEWAKLIYSAGFSDYKITPVLGVRSLIEVFP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1009 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Apr3g1009 358 PANTHER ORCINOL O-METHYLTRANSFERASE 6 358 - -
Apr3g1009 358 Pfam O-methyltransferase domain 130 340 IPR001077 GO:0008171
Apr3g1009 358 Gene3D Vaccinia Virus protein VP39 107 358 IPR029063 -
Apr3g1009 358 SUPERFAMILY "Winged helix" DNA-binding domain 8 110 IPR036390 -
Apr3g1009 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Apr3g1009 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 356 IPR029063 -
Apr3g1009 358 Gene3D - 2 106 IPR036388 -
Apr3g1009 358 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Apr3g1009 358 PANTHER O-METHYLTRANSFERASE 6 358 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1009 Apr-Chr3 24893225 24894666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1009 30 344 Monolignol Biosynthesis Gene Families AT5G54160 34.062 9.19e-56 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1009 - K16040 gmx:100794122 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1009 3 24893225 24894666 Apr3g1009 3 24893225 24894666 ECH