Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1008 ATGGATTTTGACAAAGACCAAGCTTCCAAACTACTTCCAGCTCAAAGCCACATATTCAATCAAATTTTCAGTTTCATAAACTCCATGTCCCTTAAATGTGCAATTGATTTGAGCATACCAGATGTCATACACAAGTATGGCCAACCTATGCCACTCTCACAACTCATTGCATCACTACCAATTCATCCCTCCAAAATTGGCAGCATTTATCGCTTGATGCGAATTTTGATCAATTCGGGTTTCTTCTCTCAACAAAATGTCACTGAAAATGAGCTAGAAGTGAGGTATATGCTAACTGATGCATCTACACTACTACTTAAGGACCATCCCTTGAGTATGACACCTCTTTTGCATGTCATACTTGATCCAATATTGATGAATCCATGGCATCAATTTTCTACTTGGTTCACAAATGAAGATCCTACACCATTTCAGACTGAAAATGGGATGACATTTTGGGATTATGCTATCCGTGAGCCCAGACTCCATCACCTTTTCAATGATGCCATGACTAGTGACACGCTATTGGTTTCTAGTGTGGTGATTGAGAAGTGCAAGGAAGTGTTCAATGGATTAGAATCATTGGTTGATGTTGGGGGAGGAATGGGCACCATGGCTAAGGTCATTGCCAAGTCATTCCCTCAACTAAAGTGCATTGTATTTGATCTCCCACATGTTGTTGCTGGCTTGCAAGGAACTGAGAACATAAAATATGTTGGAGGAGACATGTTTGAAGCTATTCCTCCTGCTGATTCTATTTTGTTGAAGTGTGTATTGCATAATTGGAACGATGAGGAATGCTTGAAAATACTAAAGAAATGTAAGGAAGCAATCACAAGCAAAGGTAAAGAAGGGAAGGTGATAATCATAGACGTAGTGATCGAGAACGAGAAGGGAGATAGTGAATTTGATCAAACGAAGCTCTTCTATGATATGGAGATGATGGCATTGGTTACTGGAAAAGAGAGGAATGAGAAAGATTGGGCTAAGCTAATTTACTCTGCAGGTTTTAGTAACTATAAGACAACTTCGGTTCTAGGTTTTAAGTCTCTAATTGAGGTTTATATGTAG 1071 0.3922 MDFDKDQASKLLPAQSHIFNQIFSFINSMSLKCAIDLSIPDVIHKYGQPMPLSQLIASLPIHPSKIGSIYRLMRILINSGFFSQQNVTENELEVRYMLTDASTLLLKDHPLSMTPLLHVILDPILMNPWHQFSTWFTNEDPTPFQTENGMTFWDYAIREPRLHHLFNDAMTSDTLLVSSVVIEKCKEVFNGLESLVDVGGGMGTMAKVIAKSFPQLKCIVFDLPHVVAGLQGTENIKYVGGDMFEAIPPADSILLKCVLHNWNDEECLKILKKCKEAITSKGKEGKVIIIDVVIENEKGDSEFDQTKLFYDMEMMALVTGKERNEKDWAKLIYSAGFSNYKTTSVLGFKSLIEVYM* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1008 356 PANTHER O-METHYLTRANSFERASE 6 355 IPR016461 GO:0008168
Apr3g1008 356 Gene3D Vaccinia Virus protein VP39 106 356 IPR029063 -
Apr3g1008 356 PANTHER ORCINOL O-METHYLTRANSFERASE 6 355 - -
Apr3g1008 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 356 IPR016461 GO:0008168
Apr3g1008 356 Pfam O-methyltransferase domain 129 338 IPR001077 GO:0008171
Apr3g1008 356 Gene3D - 2 105 IPR036388 -
Apr3g1008 356 Pfam Dimerisation domain 29 76 IPR012967 GO:0046983
Apr3g1008 356 SUPERFAMILY "Winged helix" DNA-binding domain 8 110 IPR036390 -
Apr3g1008 356 CDD AdoMet_MTases 195 294 - -
Apr3g1008 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 355 IPR029063 -
Apr3g1008 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1008 Apr-Chr3 24884138 24885360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1008 29 354 Monolignol Biosynthesis Gene Families AT5G54160 32.229 6.53e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1008 - K16040 gmx:100793263 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1008 3 24884138 24885360 Apr3g1008 3 24884138 24885360 ECH