Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1001 ATGGCGGGTCCCATTCTTCTTCGGTCTCTCTGGTCCTCAACCAGAAAATCCTTCTCCTCCTCTTCTGCCCCTCTCACTCCCTACCGCTTCTTCTCACGCGCCTTCGCCGCAGCACCTGCCGCCGCCGCCGCCGCCGCCGCCTCACCCGGCGCCTCACTCGACCCTAGCCGTCTCCGCAACGTCGCCGTGATTGCCCATGTCGATCACGGCAAGACCACTCTCATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACATCCCCCACGAGCGCGCCATGGACTCCATCACTCTCGAGCGCGAGCGTGGCATCACCATCGCTTCCAAGGTTCGTTCCCTAATCTCGCCCTCGAATCCAACGTTCCTCCACTTCGTTACGTCTGTTTCCTGGAAAGAGAATGAGCTGAACATGGTTGATACCCCTGGACATGCTGATTTTGGTGGCGAAGTTGAACGTGTTGTTGGTATGGTTGAGGGGGCAATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCGCAAACAAAATTTGTTCTTGCAAAAGCCTTGAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTTCAGTTACTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAGCAACTAGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCGTCCACGTCATTTACAAAGGACCCCCCTGCTGAGGCCAAAAATATGTCACAATTGCTTGATGCAGTTGTAACACATGTCCCACCACCAAATGCAAGCATTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAACGAGATTTCTATCTTGGGCGAATTTTGACTGGACGCATATATTCTGGGGTTGTTCGTGTCGGTGACAGGGTTCATGGACTACGTAATAAAGATTCTGGTGCAGAAAAAATTGAAGATGGAAAGGTGGTGAAGTTGATGAAAAAGAAGGGTACGAACATGGCTCTAACTGATTGTGCTGGAGCTGGCGATATAATATCAGTTGCTGGCTTGGCAACTCCATCAATAGGCCATACAGTGGCAACAGTGGAGGTTATGTCTGCGTTGCCCACAGTTGAGTTGGATCCTCCAACAATTTCCATGACTTTTGGTGTAAACGACTCCCCATTGGCTGGTCGTGATGGCACTCATTTGACTGGAGGAAGAATTGGGGACCGACTGATGGCTGAAGCTGAAACGAACCTTGCAATAAATGTGCTTCCAGGTTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATCGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCCCCACCTAAAGTCATGTATAAAACTGAAAATGGTCAGAAGCTTGAGCCCGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGCTTGGTAATGGAGGCCTTGTCTCATAGACGAGGTGAGGTTACTGACATGGGTCCTGTCTCTGGAACTGTTGGTCGAACTAGATTGTCTTTGACTTGTCCATCAAGGGGCCTGGTTGGATACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTTCTCGCATATGAAAAATTTCGAGGCCCGCTTGGCAATGTCAGGAAAGGAGTTCTGGTGTCAATGGGTTTTGGTACAATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGAGGGACTCTTTTTGTAACTCCTGGAATGGAGTCGTATGATGGAATGATTGTTGGAGAGCACTCACGGGATACAGATCTTGATGTTAATCCAGTGAGGGCTAAAGAACTTACAAATGTGCGTGCTGCTGCAAAGGACGAAAATGTGAAGCTGTCTCCTCCTCGCCTTATGACGCTTGAAGAAGCTATAGGATATGTTGCTTCGGATGAGCTGATTGAGGTTACACCAAAGGCCATCCGTTTACGTAAAAAATACCTTGATGTTAACAAGCGTAAAGCCATGAGTAAAAGGCCAAAGGAATGA 2046 0.4839 MAGPILLRSLWSSTRKSFSSSSAPLTPYRFFSRAFAAAPAAAAAAAASPGASLDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSITLERERGITIASKVRSLISPSNPTFLHFVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTSFTKDPPAEAKNMSQLLDAVVTHVPPPNASIDAPFQMLVSMMERDFYLGRILTGRIYSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMALTDCAGAGDIISVAGLATPSIGHTVATVEVMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQKLEPVEEVTIEVNDEHVGLVMEALSHRRGEVTDMGPVSGTVGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLAYEKFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGTLFVTPGMESYDGMIVGEHSRDTDLDVNPVRAKELTNVRAAAKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKAMSKRPKE* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1001 681 Gene3D Elongation Factor G (Translational Gtpase), domain 3 381 665 - -
Apr3g1001 681 PRINTS GTP-binding elongation factor signature 60 73 IPR000795 GO:0003924|GO:0005525
Apr3g1001 681 PRINTS GTP-binding elongation factor signature 100 108 IPR000795 GO:0003924|GO:0005525
Apr3g1001 681 PRINTS GTP-binding elongation factor signature 135 145 IPR000795 GO:0003924|GO:0005525
Apr3g1001 681 PRINTS GTP-binding elongation factor signature 151 162 IPR000795 GO:0003924|GO:0005525
Apr3g1001 681 PRINTS GTP-binding elongation factor signature 187 196 IPR000795 GO:0003924|GO:0005525
Apr3g1001 681 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 680 - -
Apr3g1001 681 Gene3D bipa protein 558 673 IPR042116 -
Apr3g1001 681 Pfam Elongation factor Tu GTP binding domain 57 266 IPR000795 GO:0003924|GO:0005525
Apr3g1001 681 SUPERFAMILY Translation proteins 218 373 IPR009000 -
Apr3g1001 681 Pfam Elongation factor Tu domain 2 290 363 IPR004161 GO:0005525
Apr3g1001 681 CDD TypA_BipA 58 268 - -
Apr3g1001 681 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 93 108 IPR031157 -
Apr3g1001 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 278 IPR027417 -
Apr3g1001 681 Gene3D - 56 269 IPR027417 -
Apr3g1001 681 SUPERFAMILY EF-G C-terminal domain-like 378 461 IPR035647 -
Apr3g1001 681 CDD BipA_TypA_C 472 552 IPR035651 -
Apr3g1001 681 TIGRFAM small_GTP: small GTP-binding protein domain 59 213 IPR005225 GO:0005525
Apr3g1001 681 Pfam Elongation factor G C-terminus 470 553 IPR000640 -
Apr3g1001 681 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 56 269 IPR000795 GO:0003924|GO:0005525
Apr3g1001 681 Gene3D - 463 557 - -
Apr3g1001 681 CDD BipA_III 380 457 - -
Apr3g1001 681 SUPERFAMILY EF-G C-terminal domain-like 472 588 IPR035647 -
Apr3g1001 681 Gene3D Translation factors 271 374 - -
Apr3g1001 681 PANTHER ELONGATION FACTOR FAMILY PROTEIN 5 680 - -
Apr3g1001 681 CDD BipA_TypA_II 276 373 - -
Apr3g1001 681 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 58 673 IPR006298 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1001 Apr-Chr3 24825565 24839385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1001 57 196 Eukaryotic Initiation Factors Gene Family AT3G22980 39.041 2.08e-22 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1001 3 24825565 24839385 Apr3g1001 3 24825565 24839385 ECH