Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0999 ATGCAAAGAAATACTAATGGGATGCACCCAGCATGTGCAGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAATTGTATATTGGCACCTTATTTTCCATCAAACAGAAACCGTGAGTTTCATGCTGTACACAGGGTTTTTGGTGTTAGCAACATAACCAAGTTGGTAAAGAATGCTAAAGAGGAAGATAGAAGGAGAGTTGTGGATTCATTGATTTGGGAAGCATGTTGTAGGCAAAGGGATCCTATACATGGTCCTTATGGAGAATACACTAAAGTTTACAATGAGTATAAAAAGGTGTTAGATGAACTTAAGAGATTCAGAGGCCAAAACCATTTGCTGCAATTGCCCCCTCTAGGATTAAAGTCTGTACAAGATTTGATTGCTTGCAATGGTACCAAAGGGGAACACAAAGCAGAAGTTGACAATGCTTTGGATTATCTTCATGGGAATAAGAATGGTATTATTGATTCTAACATTTATAGTACTTATTGTTCCAATTATTTACAAGAGTTTCAGAACATAAGGCCGGAAGTTGTCATGCCGTTTCAGCAGCACTCTCAACCATACTTTATTGCAGGTATCAATGATTTTTGTTGCCATAGATTGATCAGTATAATTCTCTTTTTCCTTTATGAGGTATGGGTTGTTATCACTGCTCTATTATGTGGTTTCTAA 678 0.3717 MQRNTNGMHPACAACKHQRKKCSENCILAPYFPSNRNREFHAVHRVFGVSNITKLVKNAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKVLDELKRFRGQNHLLQLPPLGLKSVQDLIACNGTKGEHKAEVDNALDYLHGNKNGIIDSNIYSTYCSNYLQEFQNIRPEVVMPFQQHSQPYFIAGINDFCCHRLISIILFFLYEVWVVITALLCGF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0999 225 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
Apr3g0999 225 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Apr3g0999 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 133 - -
Apr3g0999 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 4 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0999 Apr-Chr3 24818262 24818939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0999 9 98 AS2 family AT1G06280 58.889 5.07e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr3g0999 LOB 1.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0999 - - gmx:100809173 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0999 3 24818262 24818939 Apr3g0999 3 24818262 24818939 ECH