Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0988 ATGACAAAGAACCAAACAGTTCCCTCTCCATCATTCCAAGCTGTGGAAATGGAAGCTTTTGATTGGGGGTATGACATTCATAGAGATGCTTCGAAGGGAAATATTAGTGGTTTTGAAGTGAAGAATGGTGTAATTGGAAGTGGGTATGGTTCATCTTTCTCTCTGGTTTTGGACAGGGAGAGAGGGGTGCTTGTGGAGGCACCTGTAAAATTGGAAAGGAAGGGTGTGTCCACTGAGAGAAGCATCGAAGCTTTGAAGAGCCATAGTGAAGCTGAGAGGAGGAGGAGAGCAAGGATTAATGCACATCTTGACACACTTCGTAGTGTGATTCCAGGTGCTAAGAAGATGGACAAAGCATCATTACTTGGTGAAGCTATTAAACATTTGAAAGAGCTGAAAAAGAAAGCAACACAAGCTAGTGAAGGTCTAATGATACCAGAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGAGGATTAAATGGTTTTCCTTATTCAATTAGGGTATCATTAAGTTGTGAATATAAACCAGGTTTGTTGTCTGATATAAGACAAGCACTAGATGCTCTTGATCTTATGATAATGAGGGCAGATATTGCAACCTTGGAAGGCAGAATGAAGAATGTCTTTGTGATAATTAGCTGCAAAGAACAAAACTTTAAAGATGCCACGTACCGTCAGTTTCTTGCCGGTTCTGTTCACCAAGCTCTTAGATCCGTGCTCAATAGATTTTCTGTTTCACATGACATCCTAGGAACCAGAAAAAGAAGAAGGGTTTCGATATTCGGTTCTTCATCTTTAGAAGACTTCTTGTAA 819 0.4029 MTKNQTVPSPSFQAVEMEAFDWGYDIHRDASKGNISGFEVKNGVIGSGYGSSFSLVLDRERGVLVEAPVKLERKGVSTERSIEALKSHSEAERRRRARINAHLDTLRSVIPGAKKMDKASLLGEAIKHLKELKKKATQASEGLMIPEDNDEISVEEQEGGLNGFPYSIRVSLSCEYKPGLLSDIRQALDALDLMIMRADIATLEGRMKNVFVIISCKEQNFKDATYRQFLAGSVHQALRSVLNRFSVSHDILGTRKRRRVSIFGSSSLEDFL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0988 272 SMART finulus 89 138 IPR011598 GO:0046983
Apr3g0988 272 Pfam Helix-loop-helix DNA-binding domain 87 132 IPR011598 GO:0046983
Apr3g0988 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Apr3g0988 272 SUPERFAMILY ACT-like 169 246 IPR045865 -
Apr3g0988 272 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 37 272 - -
Apr3g0988 272 Gene3D - 79 141 IPR036638 GO:0046983
Apr3g0988 272 PANTHER TRANSCRIPTION FACTOR BHLH30 37 272 IPR045847 GO:0003700|GO:0006355
Apr3g0988 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 140 IPR036638 GO:0046983
Apr3g0988 272 CDD ACT_UUR-ACR-like 170 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0988 Apr-Chr3 24728976 24730670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0988 70 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 38.776 1.57e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0988 HLH 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0988 - - aprc:113859663 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0988 3 24728976 24730670 Apr3g0988 3 24728976 24730670 ECH