Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0976 ATGGACTCCGTTGCCGGAGCTCCGTCCACCGCCGTGGTTGTTCCGCCGCGTCCTCCGTCGTCATCGCCGTTCCCCGGCCGGGAAGACTGCTGGAGCGAGGAGGCGACGTTCACCCTCATCGACGCCTGGGGCGAGCGCTACCTTGAGCTCAACCGCGGCAACCTCCGTCAGAAACACTGGCAGGAGGTCGCCGACGCCGTAAACCACCGTCACGTCAGCAACAACAGCAAGAAACCGTTCCGCACCGACGTTCAGTGCAAGAACCGCATCGACACCCTCAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCCGATTCGCACTCCGGCTATCTCAGCCCCTGGCCTTTCTTCTCTCGCCTCGACGCCCTCATCGGCGACACTTTTCCGGCCAAAAAGCTTTCTCCGCCGCCCGCCGCCAAACCGCCGCTGCAGCCGCAGCCGCTGGCGTGGATACCTTCACATCCCGTCGGTCCCCGATCCGGAACTCAGAAACGGCCGGCTCCGGCGCCGGCCAGGGAGGACTCGACCTTCCGGCGGAATTTCTCGGCGTTCGCCGCCGCGGCGGCGGCTGCGGCGGAGGCGGAGAGCGGCGAGTCGGAGGGTTGGAGGTCGAGTAGCGGTGGTTCGGGGAGTGGGAAGAAAGAGAGAGAGAGTGATAGGGATTGGGAATTTGGGTACAGAGAACTTGCTCAAGCTATAGAGAGGTTCGGCGAGATATACGAGAGAGTGGAAGGTATGAAGCAAAGGCAAATGGTGGAGTTGGAGAAACAGAGAATGCAATTTACTAAGGATTTGGAGAGCCAGAGAATGCAGCTTTTCATGGAAACGCAGGCTCAGTTGCAGAAAATCAAACGCTCCAAACGTTCTTCTGGAGCTGACAGTTTCTCATAG 894 0.5951 MDSVAGAPSTAVVVPPRPPSSSPFPGREDCWSEEATFTLIDAWGERYLELNRGNLRQKHWQEVADAVNHRHVSNNSKKPFRTDVQCKNRIDTLKKKYKIEKARVSDSHSGYLSPWPFFSRLDALIGDTFPAKKLSPPPAAKPPLQPQPLAWIPSHPVGPRSGTQKRPAPAPAREDSTFRRNFSAFAAAAAAAAEAESGESEGWRSSSGGSGSGKKERESDRDWEFGYRELAQAIERFGEIYERVEGMKQRQMVELEKQRMQFTKDLESQRMQLFMETQAQLQKIKRSKRSSGADSFS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0976 297 Coils Coil 252 272 - -
Apr3g0976 297 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 4 294 - -
Apr3g0976 297 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 4 294 IPR044823 -
Apr3g0976 297 Pfam Myb/SANT-like DNA-binding domain 28 124 IPR044822 -
Apr3g0976 297 MobiDBLite consensus disorder prediction 135 153 - -
Apr3g0976 297 MobiDBLite consensus disorder prediction 193 221 - -
Apr3g0976 297 Gene3D - 31 99 - -
Apr3g0976 297 MobiDBLite consensus disorder prediction 1 27 - -
Apr3g0976 297 MobiDBLite consensus disorder prediction 133 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0976 Apr-Chr3 24641007 24644582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0976 227 286 Trihelix Transcription Factor Family AT3G14180 53.333 1.02e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr3g0976 Myb_DNA-bind_4 3e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0976 - - lang:109355153 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0976 3 24641007 24644582 Apr3g0976 3 24641007 24644582 ECH
Apr1g1525 1 24740696 24746087 Apr3g0976 3 24641007 24644582 ECH