Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0958 ATGGCTTCAGAGAAGAAACTTTCAAACCCAATGAGGGAGATCAAGGTTCAGAAGCTCGTTCTCAACATCTCAGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCTGCCAAGGTGCTTGAGCAACTCAGCGGTCAAACCCCAGTGTTTTCCAAAGCAAGGTACACTGTTCGTTCATTTGGGATTAGACGTAATGAGAAGATTGCATGCTATGTCACTGTTAGAGGTGACAAGGCAATGCAACTTTTGGAGAGTGGTTTGAAGGTGAAGGAATATGAACTTCTGAGAAGGAACTTCAGTGATACTGGCTGTTTCGGCTTTGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTATGGAATGGATTTCTACGTTGTTCTGGAGCGTCCTGGGTATCGTGTGGGACGTCGCCGAAGGTGCAAGTCTCGTGTTGGGATTCAGCACCGTGTCACAAAAGAGGATGCTATGAAGTGGTTCCAGGTGAAGTATGAGGGAGTAATCCTTAACAAGGCCCAGACAATTGTTAGTTAG 549 0.4536 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQTIVS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0958 182 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Apr3g0958 182 Gene3D - 2 177 IPR022803 -
Apr3g0958 182 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 181 IPR002132 GO:0003735|GO:0005840|GO:0006412
Apr3g0958 182 Pfam Ribosomal protein L5 9 62 IPR031310 -
Apr3g0958 182 SUPERFAMILY RL5-like 8 173 IPR022803 -
Apr3g0958 182 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Apr3g0958 182 PANTHER 60S RIBOSOMAL PROTEIN L11-1 1 181 - -
Apr3g0958 182 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0958 Apr-Chr3 24496261 24498502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0958 1 181 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 95.028 1.55e-129 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0958 K02868 - nnu:104609743 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0958 3 24496261 24498502 Apr3g0958 3 24496261 24498502 ECH