Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0933 ATGGGGAACAATAGTATGTTTCGTTATGCGGATGGAGTGGACAAGTTGTTGATGTTCTTTGGGACCTTGGGAAGCCTTGGAGATGGGCTACAAACCCCTCTCATGATGTACATTCTTAGTCATGTGATCAATGCTTATGGAGACAAGAATAGCAATTTGACAAAGCATGATGTGAACAAGTATGCATTAAGGCTTTTTTGTGCTGCAATTGGAGTTGGACTTTCAGCTTTTATTGTTTTCATGCCTTTATACCAAATGATTTTGGCTACTACAGAAGGAATATGTTGGGCAAGAACTTCTGAGAGACAGGCTTCCAGAATGAGAATAGAATACTTAAAATCAGTCCTACGACAAGAAGTTGGTTTTTTTGACACTCAGACTGCTGGGTCTTCAACAACCTACCAAGTTGTCTCACTCATCTCCTCAGATGCAAATACAATCCAAGTTGCCTTGTGTGAGAAGATACCTGATTGCCTGGCTTACATGTCAACATTCTTATTCTGCCACATCTTTGCATTTGTACTATCCTGGAGACTTACATTGGCAGCCATACCACTCTCTGTCATGTTCATTGTTCCAGCACTTATATTTGGGAAGATCATGTTGGATCTTGTAATGAAAATGATTGAGTCTTACGGAGTTGCTGGTGGGATTGCTGAACAAGCAATATCTTCAATAAGAACTGTTTATTCTTATGTTGGGGAGAATCAAACACAAAACAGATTTAGCAGTGCACTTCAAAAGACTATGGAATTTGGAATACAGCAAGGTTTTGCAAAGGGGTTGATGTTGGGAAGTATGGGAGTTATTTATATAAGCTGGGGTTTTCAGGCTTGGGTTGGAACTTTTCTGATAACCAAAAAGGGAGAACAAGGTGGCCATGTGTTTGTAGCAGGCTTCAATGTCCTCATGGGAGGGCTGAGCATTTTAAGCGCCCTTCCAAATTTAACTGCCATCACTGAGGCAACTGCTGCTGTCACTCGTCTTTTTGAAATGATTGATCGGGTGCCAACTATAGATTCCGAAGATAAGAAAGGAAAGGCCTTATCATATGTGAGAGGAGAAATTGAATTCAAAGACATCTACTTTTGCTACCCATCTAGGCCAGACACACAAGTCTTGCAGGGATTGAATCTCACTATCTCAGCAGGCAAGAGGGTAGGCCTTGTGGGAGGTAGTGGTTCAGGTAAATCCACTGTCATAGCACTGCTTGAAAGGTTTTATGACCCTGTTGAGGGAGAAATACTCATGGATGGTCACAAGATTAATAGGCTTCAATTGAAATGGTTGAGATCTCAACTTGGCCTTGTAAATCAAGAGCCTGTTCTCTTCGCCACATCCATAAAAGAGAATATATTGTTTGGAAAGGAAGGGGCTTCAATGGAAAGTGTGATAAGTGCAGCTAAATCAGCTAATGCACATGATTTCATTGTCAAGTTACCAGATGGATATGAAACTCAAGTTGGGCAGTTTGGATTTCAATTGTCTGGTGGGCAGAAGCAACGCATTGCCATAGCAAGAGCTTTACTGAGGGATCCAAAGGTTCTCTTGCTCGATGAAGCTACAAGTGCATTGGATGCTCAATCTGAAAGAGTGGTACAGGCTGCAATTGATCAAGCTTCAAAAGGAAGGACAACAATCATCATTGCTCACCGCTTGTCAACAATTCGAGCAGCTCACATGATTGCAGTCCTTCAAGCAGGGAGAGTGATTGAATCAGGTACTCATAATGAGCTCATGGAATTGAATGATGGGGAGTATGCTCGCATGGTAGAATTGCAACAAGTAACAACTCAGAATGATGAATCAAAGCATTCCAATTTTCTTCAAATAGAAGGAAAGAGCTCCTACAGGATGAGCATTCCTCAAAGTCCAGCTATAAGTTTGAGATCAAGCACTGCAGGCACTCCAATGTTGTATCCCTTCAGTCAAGGATTTTCCATGGGAACACCTTACTCCTATTCTATCCAATATGATCCTGATGATGATAGTTTTGAAGATAGCTTGAAAAGATCAAACTATCCAGCTCCTTCGCAGGGGCGCTTGCTGAAAATGAATGCACCCGAGTGGGGAAGCGCAGTGCTAGGAATCTTAGGTGCAATAGGGTCAGGAGCAGTACAACCTGTAAATGCATACTGTGTAGGAACACTCATATCAGTTTATTTTGAAACTGATAGCTCTGAGATGAAGTCTAAAACTAAAGTCCTGGCCCTCATTTTCTTAGGAATTGGTGTTTTTAACTTCCTTACTAGTATTCTCCAACACTATAACTTTGCAGTAATGGGAGAAAGGTTGACTAAGAGAATAAGAGAGAAGATACTAGAGAAGTTGATGACTTTTGAGATAGGGTGGTTTGATCATGAAGAAAACACAAGTGCATCCATTTGTGCAAGATTATCATCGGAAGCCAACTTGGTTCGTTCCCTTGTTGGCGATCGGATGTCTTTGTTGGCACAAGCAGTTTTTGGATCTGTCTTTGCCTACACTCTAGGACTTGTGCTCACGTGGAGGCTTTCCCTTGTGATGATTGCAGTGCAGCCATTAGTCATTGGAAGCTTTTATTCAAGAAGTGTCTTGATGAAGAGTATGGCAGAAAAAGCTCGTAAAGCACAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTTATAAACCACAGAACCATAACTGCCTTCGGCTCTCAGAAAAGAATGATGGCACTTTTCAAATCCACAATGGTGGGGCCTAAAAAGGAGAGTATTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTTAGCTCCCAGTTCTTTAACACTGCCTCAGCAGCACTGGCTTATTGGTATGGTGGGAGGCTCCTCATAGATGGTCTCATAGAACCAAAGCACCTATTCCAAGCATTTTTAATATTACTCTTCACTGCCTACATTATTGCAGATGCTGGAAGCATGACTTCTGACTTGTCCAAAGGAAGCAGTGCAGTTGGATCAGTTTTTGCAATCCTAGACAGGAAAAGTGAGATTGATCCTGAGATTTCATGGGGAGCTGAGAAAAAAAGGAGAATAAGGGGCAGAGTGGAGCTTAAAAGTGTATTCTTTGCATATCCAACTAGACCTGATCAAATGATTTTCAAGGGTCTGTGTCTTAAAGTTGAAGCCGGGAGAACAGTGGCACTAGTGGGGCACAGTGGTTGCGGTAAATCAACCGTTATTGGCCTTATTGAGAGGTTTTATGATCCTGTGAAGGGAACAGTATGCATAGATGAACAAGACATCAAGTCCTATAATTTGAGAATGCTGAGGTCACAAATTGCATTAGTAAGTCAGGAACCAACCCTTTTTGCCGGAACCATTCGAGAAAATATTGCCTATGGGAAAGAAAACACAACTGAATCTGAGATAAGAAGGGCTGCAGCTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAATGATGGGTATGAGACACAATGCGGCGAAAGAGGTGTTCAGCTATCCGGTGGTCAAAAACAAAGAATAGCCTTAGCTCGAGCCATACTGAAGAATCCTGCAATACTACTTTTAGATGAGGCAACTAGTGCACTCGATAGTGTGTCTGAGATCTTGATTCAAGAAGCACTAGAAAAGATAATGGTTGGAAGAACATGCATAGTAGTGGCACATAGGCTATCCACAATACAGAAATCCAACTCCATTGCTGTGATTAAGAATGGGAAGGTTGTGGAACAAGGTTCACATAATGAATTGATTTCCCTTGGACGTGATGGTGCATATTATTCTCTTGTTAAACTTCAAAGTGGTAGCTCCCCTAGGTAA 3789 0.4181 MGNNSMFRYADGVDKLLMFFGTLGSLGDGLQTPLMMYILSHVINAYGDKNSNLTKHDVNKYALRLFCAAIGVGLSAFIVFMPLYQMILATTEGICWARTSERQASRMRIEYLKSVLRQEVGFFDTQTAGSSTTYQVVSLISSDANTIQVALCEKIPDCLAYMSTFLFCHIFAFVLSWRLTLAAIPLSVMFIVPALIFGKIMLDLVMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTQNRFSSALQKTMEFGIQQGFAKGLMLGSMGVIYISWGFQAWVGTFLITKKGEQGGHVFVAGFNVLMGGLSILSALPNLTAITEATAAVTRLFEMIDRVPTIDSEDKKGKALSYVRGEIEFKDIYFCYPSRPDTQVLQGLNLTISAGKRVGLVGGSGSGKSTVIALLERFYDPVEGEILMDGHKINRLQLKWLRSQLGLVNQEPVLFATSIKENILFGKEGASMESVISAAKSANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRAAHMIAVLQAGRVIESGTHNELMELNDGEYARMVELQQVTTQNDESKHSNFLQIEGKSSYRMSIPQSPAISLRSSTAGTPMLYPFSQGFSMGTPYSYSIQYDPDDDSFEDSLKRSNYPAPSQGRLLKMNAPEWGSAVLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSEMKSKTKVLALIFLGIGVFNFLTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDHEENTSASICARLSSEANLVRSLVGDRMSLLAQAVFGSVFAYTLGLVLTWRLSLVMIAVQPLVIGSFYSRSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFGSQKRMMALFKSTMVGPKKESIRQSWISGFGLFSSQFFNTASAALAYWYGGRLLIDGLIEPKHLFQAFLILLFTAYIIADAGSMTSDLSKGSSAVGSVFAILDRKSEIDPEISWGAEKKRRIRGRVELKSVFFAYPTRPDQMIFKGLCLKVEAGRTVALVGHSGCGKSTVIGLIERFYDPVKGTVCIDEQDIKSYNLRMLRSQIALVSQEPTLFAGTIRENIAYGKENTTESEIRRAAALANAHEFISGMNDGYETQCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILIQEALEKIMVGRTCIVVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGRDGAYYSLVKLQSGSSPR* 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0933 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 356 592 IPR003439 GO:0005524
Apr3g0933 1262 SUPERFAMILY ABC transporter transmembrane region 681 1000 IPR036640 GO:0005524|GO:0016021
Apr3g0933 1262 ProSitePatterns ABC transporters family signature. 1156 1170 IPR017871 GO:0005524
Apr3g0933 1262 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1257 IPR039421 -
Apr3g0933 1262 Pfam ABC transporter 1036 1184 IPR003439 GO:0005524
Apr3g0933 1262 Pfam ABC transporter 374 523 IPR003439 GO:0005524
Apr3g0933 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 595 IPR027417 -
Apr3g0933 1262 CDD ABC_MTABC3_MDL1_MDL2 1017 1256 - -
Apr3g0933 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 694 981 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0933 1262 CDD ABC_6TM_Pgp_ABCB1_D2_like 683 999 - -
Apr3g0933 1262 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 329 - -
Apr3g0933 1262 Pfam ABC transporter transmembrane region 695 966 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0933 1262 Pfam ABC transporter transmembrane region 18 306 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0933 1262 SUPERFAMILY ABC transporter transmembrane region 7 340 IPR036640 GO:0005524|GO:0016021
Apr3g0933 1262 SMART AAA_5 1044 1236 IPR003593 -
Apr3g0933 1262 SMART AAA_5 383 568 IPR003593 -
Apr3g0933 1262 Gene3D ABC transporter type 1, transmembrane domain 79 923 IPR036640 GO:0005524|GO:0016021
Apr3g0933 1262 ProSitePatterns ABC transporters family signature. 495 509 IPR017871 GO:0005524
Apr3g0933 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1011 1256 IPR027417 -
Apr3g0933 1262 Gene3D - 1006 1257 IPR027417 -
Apr3g0933 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1253 IPR003439 GO:0005524
Apr3g0933 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0933 1262 Gene3D ABC transporter type 1, transmembrane domain 925 1258 IPR036640 GO:0005524|GO:0016021
Apr3g0933 1262 Gene3D - 354 607 IPR027417 -
Apr3g0933 1262 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1257 - -
Apr3g0933 1262 CDD ABC_MTABC3_MDL1_MDL2 356 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0933 Apr-Chr3 24284357 24291068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0933 6 1262 Calmodulin-binding Proteins AT2G36910 43.069 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0933 K05658 - gmx:100788127 2262.65