Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0928 ATGGCCCACATGGATTTTGGAGTGGCTATTATTGGGTTGCTCTTAATGGGTATTCTCACAATGTTCCCCTCTACTTATGCCTATGGTGGAGGGTGGACTAATGCACATGCTACCTTCTATGGGGGGAGTGATGCATCAGGGACAATGGGTGGGGCTTGTGGCTATGGGAATCTTTATAGCCAAGGGTATGGAACAAATACTGCTGCTTTGAGCACAGCACTGTTCAATAATGGGTTGAGCTGTGGCTCTTGCTATGAGATTAGGTGTGCTAATGACCACAAGTGGTGCTTGCCTGGCTCCATTGTGGTCACTGCCACCAACTTCTGCCCTCCAAACAATGCCTTACCCAACAATGCAGGAGGCTGGTGTAACCCTCCTCTTCAACATTTTGATCTCGCTCAACCTGTCTTCCTACGCATTGCCCAATACAAAGCGGGAATTGTTCCTGTGTCTTATAGAAGGATTCCCTGCAGGAGAAGGGGAGGCATAAGATTCACCATCAATGGACATTCCTACTTCAACTTAGTCCTAATAACAAACGTAGGTGGTGCTGGGGATGTACATGGTGTGGCCGTCAAAGGGTCAAGAACTGGTTGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAAAGCAACAACTATCTCAATGGTCAAAGCTTGTCTTTTAAGGTTACCACCAGTGATGGCCGTAGTGTGGTGTCCTACAATGTTGCTCCAGCTGGCTGGTCCTTTGGTCAAACCTACACTGGTTCTCAATTCCGCTAG 768 0.4818 MAHMDFGVAIIGLLLMGILTMFPSTYAYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCANDHKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVSYRRIPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHGVAVKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRSVVSYNVAPAGWSFGQTYTGSQFR* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0928 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Apr3g0928 255 Gene3D - 19 158 IPR036908 -
Apr3g0928 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Apr3g0928 255 SMART dpbb_1 67 152 IPR007112 -
Apr3g0928 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Apr3g0928 255 PANTHER EXPANSIN-A10 14 255 - -
Apr3g0928 255 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Apr3g0928 255 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Apr3g0928 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Apr3g0928 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Apr3g0928 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Apr3g0928 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Apr3g0928 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Apr3g0928 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Apr3g0928 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Apr3g0928 255 PANTHER EXPANSIN-A15 14 255 IPR002963 GO:0009664
Apr3g0928 255 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Apr3g0928 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Apr3g0928 255 Pfam Lytic transglycolase 67 152 IPR009009 -
Apr3g0928 255 Gene3D - 162 254 IPR036749 -
Apr3g0928 255 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Apr3g0928 255 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Apr3g0928 255 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Apr3g0928 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Apr3g0928 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Apr3g0928 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0928 Apr-Chr3 24200278 24202378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0928 8 255 Expansin Gene Family AT2G03090 80.645 1.06e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0928 - - gmx:100527059 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0928 3 24200278 24202378 Apr3g0928 3 24200278 24202378 ECH
Apr3g0928 3 24200278 24202378 Apr1g0928 1 13070199 13072223 ECH
Apr3g0928 3 24200278 24202378 Apr9g2993 9 36806866 36809111 ECH
Apr3g0928 3 24200278 24202378 Apr6g0206 6 2171435 2172743 ECH