Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0927 ATGGGTAGAGTAAAGCTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGCCAAGCAACATATGCGAAAAGGAAGAATGGAATTATGAAAAAAGCTACTGAGTTATCCATATTGTGCGATATAGATATTATACTTCTCATGTTCTCGCCAAATGGAAAACCTTCACTTTGCATTGGGAGGCGCAGTAACTTAGAGGAGGTTATTGCAAAGTTTGCTCAAGTAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAGAGTCTTGAGGCACTGAAGAAAACATTCAAGAAGTTAGATCATGATGTAAATATACAAGAATTTCTGGGTACAAGTAGTCAAACTATTGAGGACTTGGGTAATCAAGCCAGGCTATTGCAGACTCAAATTTCTGAAATTAATAAGAGATTAAGTCATTGGACTGAGTTTGATAAAATAAGCAGTGTGGAACAACTGGGACAGATGGAAAATTCACTTAGGGAGTCACTTAATCAAATTCGAACTCGTAAGGAAAATATACATAAGCAGCAACTTGTGCCATTGCAGTGCAATAACCAGTTTAGTGAAATGAATATTCCCTTCAGAATGAGTGCAGAGCAGCATCTCCAACCTCTATCATGGATTGCTAATGGTGACAGCCAAAATATAGTTTTACCAGAGGACTCAAACTTGTTTATCCACAAAGATGTGGAAGGATCTGCAAGTTCATCTTTTGGGAGTTATGCCAGTTATCTTGGCTCAAGTAGCAAAACTGAGATTTCTAACTCTGGCCAAGAAAATGGTGTCCTTAGTGACATGAGCAGTACAGCCCCTCTGAGACTACAATTGAATGGGCAGTTTCCATATCTGCCATACAATTTTAATTTACTGAATAATTTGAAGTTCCAACCATCTGCAGAGATCAGTCCACAAGAAAACCCAGTAGATTATCATGTCAATGGAAGTTTTGAAGCCCCTAGTACTGGTTTTGATTCTAATCACCATGGTTGGGCTTCCACATCAGGGCCTTGTGCTGTTACTATGTTTGATGAGCATTTGTACGCCCAGGCAAGTACCACTAAACTGCATTTTGGCCTCACATAG 1077 0.3965 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPNGKPSLCIGRRSNLEEVIAKFAQVTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLGNQARLLQTQISEINKRLSHWTEFDKISSVEQLGQMENSLRESLNQIRTRKENIHKQQLVPLQCNNQFSEMNIPFRMSAEQHLQPLSWIANGDSQNIVLPEDSNLFIHKDVEGSASSSFGSYASYLGSSSKTEISNSGQENGVLSDMSSTAPLRLQLNGQFPYLPYNFNLLNNLKFQPSAEISPQENPVDYHVNGSFEAPSTGFDSNHHGWASTSGPCAVTMFDEHLYAQASTTKLHFGLT* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0927 358 CDD MADS 2 54 - -
Apr3g0927 358 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr3g0927 358 Coils Coil 77 97 - -
Apr3g0927 358 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 349 - -
Apr3g0927 358 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Apr3g0927 358 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 349 - -
Apr3g0927 358 Coils Coil 114 134 - -
Apr3g0927 358 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Apr3g0927 358 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Apr3g0927 358 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr3g0927 358 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr3g0927 358 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr3g0927 358 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0927 Apr-Chr3 24173768 24179084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0927 1 347 Type I MADS-box Gene Family AT2G03060 50.265 6.78e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr3g0927 SRF-TF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0927 - - gmx:100811701 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0927 3 24173768 24179084 Apr3g0927 3 24173768 24179084 ECH