Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0926 ATGGATTCTCTTTCTCTTTGCTCTAACTACGGTGTGGTTTCAGCTGTTTCTTCATCCCACCAAGATTGCTATGGCTCTACGAGCTGGGGTTCACCCTTCATGAGGCAATGTCTTGGTAGGAGCTTTGAGGAACACCCCAACAGTGATGGGGTGGAGGAGGGTAAAGGGTCTGATAGTAGTGATGATGGGGTTGGAGAAGACAGTGACAAAGTTAACCTTAATGCTAATAACTTTAACGAAGAGAACCCTAATGAGAATTCTCTTAGTGGCAAAGAGGTTGTAGATACTGGGCATTCCAAACTTTGCGCAAGAGGGCATTGGAGACCTGCAGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGGCCTCAAAACTGGAACCTCATAGCCGAGAAGTTAGAAGGAAGATCAGGCAAGAGTTGTAGACTGAGGTGGTTCAATCAGTTGGACCCGAGGATTAATAGGAGAGCATTCACTGAAGAAGAGGAAGAAAGGCTAATGCAGGCACATAGAATCTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAACCACTGGCACGTTATAATGGCCAGAAAGTACAGAGAACAATCTAGTGCTTACAGGAGGAGGAGGCTGAGCCAATCTGTATACAGAAGAGTAGAGGAAAATACAACAAGTAGCTTTGTCTCTAGAGACACAGCAGCCACTGCAGTTACAGAACAACCACCACCACACTATTGTCTCAATGTCACAAATGGAGGACTTGGCAATAACATTGCTACTTTCCCATATGCTGCTGCCTCCTTCCATGGTGGGGGTGGGGTTGATTATGGCTTAAATGGTTCACCCCACATGACTGGTGACAAAGAAGCAATCTCAACCACCAAGTTGGCCCCTCCTCATATTGGCTTGTATGCTCAACCAACGCCACTTGATTTCATTTCTGGTGGTAGAAGCAATGACATAGTGGGGGAGTATTTTGGCCAGAACAGATGCTGGGACAGGCCAAGTGATGCACATTCTCATCATCACCAACCATCTGATTTCTACCCTCATTATCCCCCTCAACAATATGTGATGCTAATGCAACACCAAAACAATCACAATTTTTACGGTTTCTCAAATTCCACAGCACAGATATTGGGCAGTGAACCTTCACTATCATCAGTGGCAGAACACAGAGATGAAGCCCTGAACAGTGACCCCCCAGATGCAATTCCCCCTCCATTTATTGATTTCCTTGGAGTAGGAGCCACATGA 1275 0.458 MDSLSLCSNYGVVSAVSSSHQDCYGSTSWGSPFMRQCLGRSFEEHPNSDGVEEGKGSDSSDDGVGEDSDKVNLNANNFNEENPNENSLSGKEVVDTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTTSSFVSRDTAATAVTEQPPPHYCLNVTNGGLGNNIATFPYAAASFHGGGGVDYGLNGSPHMTGDKEAISTTKLAPPHIGLYAQPTPLDFISGGRSNDIVGEYFGQNRCWDRPSDAHSHHHQPSDFYPHYPPQQYVMLMQHQNNHNFYGFSNSTAQILGSEPSLSSVAEHRDEALNSDPPDAIPPPFIDFLGVGAT* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0926 424 Gene3D - 157 228 - -
Apr3g0926 424 ProSiteProfiles Myb-like domain profile. 104 150 IPR001005 -
Apr3g0926 424 Gene3D - 104 155 - -
Apr3g0926 424 SUPERFAMILY Homeodomain-like 104 197 IPR009057 -
Apr3g0926 424 CDD SANT 158 198 IPR001005 -
Apr3g0926 424 MobiDBLite consensus disorder prediction 41 91 - -
Apr3g0926 424 PANTHER MYB TRANSCRIPTION FACTOR 1 424 - -
Apr3g0926 424 MobiDBLite consensus disorder prediction 70 91 - -
Apr3g0926 424 Pfam Myb-like DNA-binding domain 156 199 IPR001005 -
Apr3g0926 424 Pfam Myb-like DNA-binding domain 104 150 IPR001005 -
Apr3g0926 424 MobiDBLite consensus disorder prediction 45 68 - -
Apr3g0926 424 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
Apr3g0926 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 150 IPR017930 -
Apr3g0926 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 205 IPR017930 -
Apr3g0926 424 CDD SANT 107 148 IPR001005 -
Apr3g0926 424 SMART sant 103 152 IPR001005 -
Apr3g0926 424 SMART sant 155 203 IPR001005 -
Apr3g0926 424 PANTHER MYB PROTEIN-RELATED 1 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0926 Apr-Chr3 24124590 24126394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0926 82 221 MYB Transcription Factor Family AT1G69560 76.351 2.45e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g0926 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0926 K09422 - gmx:100810632 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0926 3 24124590 24126394 Apr3g0926 3 24124590 24126394 ECH