Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0916 ATGGACTTAACAAACAGCAGTACTACCCAAACCTTAGATGCAGATACTAAACCCACACCAACAACCCAACCCACCAACGCTCAAACCTCAAAGTCTCAATCTTTCACCAACGGCACACTAAAGCGCCACTCGACAATCACTGCCCCACTGATACAACCACCCCCCATGGTGGTTTCTTACAAAGAATGCCTCAAAAACCATGCTGCCACCATTGGTGGCCATGCACTTGACGGTTGTGGTGAGTTCATGCCTTCTTCCTCCACCAACCTCACTGATCCACGATCTCTCAAATGTGCAGCATGTGGCTGCCACCGCAACTTCCACCGCCGTGACCCTCAAGAACACAACAATACCACCACCAACAGCAATAACAACAGCAACAACAACAACCCCACCTTTCTCAACTGCATCTACGCCCCTTCAGCTCCACCCCCGCTACCTCACCGAGCCATAAGCCAAAGCACAAGTCCAAGCCTGAGTTCAAGCCCGAGCCATAGTCCAAGCCCAATGTCAAGCCCTTCACCACCACCACTCTCACACTTGCCACCTTCATACCACACTTCAGCACCCCACATGCTCTTAGCCCTTGGCACTGCCTATTCTGCACCCTCTTCTGATGATCATCACCATCATAAAAGTCTCAGCTTTTTGAATGTGAAGAGTGAGAACCCAAGTGGGAAGAAGAGGTATAGAACTAAGTTCAGCAAGGAGCAGAAGGAGAAGATGTATAGTTTTTCTGAGAAATTGGGGTGGAGAATGCAAAAGGGGGATGATGGGTTGGTCCAGGAATTCTGCAATGACATTGGGGTCTCTAGAGGGATCTTCAAGGTATGGATGCACAACAACAAGAACACTTTTAGGAAGAGATCGGAAGTGGGAAATGCTCTTCAAACTGAAAAGATCAATGGGGATCATGATGATGGCAATGCCGTTGGTGGGGGTGGCGGTGGTGGTGGAGGAGGAGGATTTGATAGTGATATCAACAACCCCTACAACCCAAATAGCAATAACAATGACATTCACATGAATGAAAATGATAGCTGTGCCAATGTTCATGTCTCTCTTAATGAGTTGTCGGCTTAG 1083 0.482 MDLTNSSTTQTLDADTKPTPTTQPTNAQTSKSQSFTNGTLKRHSTITAPLIQPPPMVVSYKECLKNHAATIGGHALDGCGEFMPSSSTNLTDPRSLKCAACGCHRNFHRRDPQEHNNTTTNSNNNSNNNNPTFLNCIYAPSAPPPLPHRAISQSTSPSLSSSPSHSPSPMSSPSPPPLSHLPPSYHTSAPHMLLALGTAYSAPSSDDHHHHKSLSFLNVKSENPSGKKRYRTKFSKEQKEKMYSFSEKLGWRMQKGDDGLVQEFCNDIGVSRGIFKVWMHNNKNTFRKRSEVGNALQTEKINGDHDDGNAVGGGGGGGGGGGFDSDINNPYNPNSNNNDIHMNENDSCANVHVSLNELSA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0916 360 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 136 - -
Apr3g0916 360 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 140 309 - -
Apr3g0916 360 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Apr3g0916 360 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11-LIKE 56 136 - -
Apr3g0916 360 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11-LIKE 140 309 - -
Apr3g0916 360 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Apr3g0916 360 MobiDBLite consensus disorder prediction 148 167 - -
Apr3g0916 360 Gene3D - 217 288 - -
Apr3g0916 360 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 227 284 IPR006455 -
Apr3g0916 360 MobiDBLite consensus disorder prediction 301 343 - -
Apr3g0916 360 SUPERFAMILY Homeodomain-like 220 288 IPR009057 -
Apr3g0916 360 MobiDBLite consensus disorder prediction 327 343 - -
Apr3g0916 360 MobiDBLite consensus disorder prediction 168 183 - -
Apr3g0916 360 MobiDBLite consensus disorder prediction 116 136 - -
Apr3g0916 360 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Apr3g0916 360 MobiDBLite consensus disorder prediction 107 186 - -
Apr3g0916 360 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0916 Apr-Chr3 23776141 23777573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0916 56 286 ZF-HD Transcription Factor Family AT1G69600 47.458 1.26e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr3g0916 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0916 - - vra:106766949 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0916 3 23776141 23777573 Apr3g0916 3 23776141 23777573 ECH