Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0914 ATGGTGCAGCGTCTCACTTACCGCAAGCGCCATAGCTATGCCACTAAATCCAACCAGCACAGGGTCGTTAAAACCCCCGGTGGCAAGCTCGTTTATCAGAGTACTAAGAAGAGAGCTAGTGGACCCAAATGCCCTGTTACTGGAAAGAGGATTCAAGGGATTCCACATTTAAGGCCAGCTGAATACAAGAGATCTAGGTTACCCAGGAACCGAAGGACTGTGAATCGTGCATATGGTGGAGTGTTGTCTGGAGGAGCTGTTAGAGAAAGAATTATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTCAAAAAGGTCTTGAAGATCCAAAAGGCAGAGGAAAAACAAGCTTTGAAGGGCTGA 363 0.4628 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAEEKQALKG* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0914 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr3g0914 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr3g0914 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr3g0914 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr3g0914 120 PANTHER - 1 119 - -
Apr3g0914 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr3g0914 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Apr3g0914 120 Gene3D - 1 37 - -
Apr3g0914 120 Coils Coil 104 120 - -
Apr3g0914 120 Gene3D - 39 120 - -
Apr3g0914 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 119 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0914 Apr-Chr3 23736243 23738684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0914 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 89.916 3.08e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0914 K02915 - gmx:100305798 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0914 3 23736243 23738684 Apr3g0914 3 23736243 23738684 ECH