Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0912 ATGGAAGGGAAAAATGATGGTGAGAAACTTGATGAGATTATGCTACCGGGGTTCAGGTTTCATCCAACAGATGAGGAGCTTGTTGGGTTTTACCTAAAGAGAAAGATTCAGCAGCGACCTCTGTCTATTGAGCTCATCAAGCAACTAGATATCTATAAGTATGATCCTTGGGATCTTCCAAAGCTGGCTTCCACGGGGGAGAAAGAGTGGTATTTCTACTGTCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTAACAGGAGCTGGGTTCTGGAAAGCTACTGGGACTGATCGCCCTATCTACTCCTCAGAGGGTTCTAAGTGTATTGGCCTGAAGAAATCTTTGGTGTTCTACAAAGGTAGAGCTGCCAAAGGGGTCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCCCTCACAGACTCATCTTCATCCCCCAAGAAGTACATAGACAAAACCATTCCTGCTAATGAATCTTGGGCAATTTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCTCAACCTTGGGTCTCTCCCTTACCTGAAACGACCACTTCTGATCATATGCTAACCAATGATAGAGACAGTAACCAATTTTGTCAACAAAACATGCCATTGACTAAGAAAACTAGCTTAACCAGCCAGTTTTGTGATGTTGACCACAATGACACACAAAACATAGCCACTGGGAATAGTGCTCCTTGTCCTCTAGATGTTGCCTCTTATAATAAATCCATTATTAATCCATTATTGCTTTACAAGCCCTTAGATCGGTTACCCATTTCAAATGGAGACCTCAGCACTGGCTTTATATTTTCATCTCCTCTTGGAACATCTTCAACTGGTGCTAAATCTTCAATGGATGCTTCGTCCTTGCTATTGAGTATGTCAACTTCTGTGCTTGGAGATTTTAGTACTAAGACCTCTGAGGGAACAACCACAAATTTTGGGGGGTTACTGGAGCATAGTAGTGGCTACCAAACACCATTACTACGTGACATGCAAGGGACCATTGGCAACCAAGATGATAATGTATTGGTAAAGATTCCTAATGTTAATGTGCATCGTGTTGATGACCAACAACAATTGGAGACATTACGATCCATTGGGTTTCCATCTATGCCTTTCAATATTGGTGATGCATGGAAGCCAAATCTGCTTTGGGATACTTCCTCTTTGTCATTGTGA 1218 0.4228 MEGKNDGEKLDEIMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSSSSPKKYIDKTIPANESWAICRIFKKTNATAQRALSQPWVSPLPETTTSDHMLTNDRDSNQFCQQNMPLTKKTSLTSQFCDVDHNDTQNIATGNSAPCPLDVASYNKSIINPLLLYKPLDRLPISNGDLSTGFIFSSPLGTSSTGAKSSMDASSLLLSMSTSVLGDFSTKTSEGTTTNFGGLLEHSSGYQTPLLRDMQGTIGNQDDNVLVKIPNVNVHRVDDQQQLETLRSIGFPSMPFNIGDAWKPNLLWDTSSLSL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0912 405 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Apr3g0912 405 PANTHER PROTEIN FEZ ISOFORM X1 1 403 - -
Apr3g0912 405 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Apr3g0912 405 SUPERFAMILY NAC domain 14 173 IPR036093 GO:0003677|GO:0006355
Apr3g0912 405 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Apr3g0912 405 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0912 Apr-Chr3 23695282 23697344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0912 5 278 NAC Transcription Factor Family AT1G26870 60.976 8.68e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr3g0912 NAM 4.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0912 - - vun:114179488 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0912 3 23695282 23697344 Apr3g0912 3 23695282 23697344 ECH