Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0902 ATGGCTGATCCTCAGAAAACTGCTCCTGGCGAGAGGGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGTTCATATCTGTTGAAGTACGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTACTTTTATGGTACTCTGGCAAGGAAGAGAAACAACTTAAGCTCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGTACTGCAATATTTCATCGGTATCCTCGGCCTGAAAAGGAATATCAGTCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATATGCAAGGACAAAGATGAAGCTGAGATCTGGTTTGTTGGTCTTAAGGCTTTAGTTGCCCGAGGTAACAGTCGCAAGTGGAGATTTGAATCAAGAACTGACAGTCTGTGTTCTGATAGTCCAAAATCTGGCACACAAAGATCCACTCCGTCATTTTCACCATTTGTATGTAACAATTTCCTTCATGGAGATACGGGCAGTGGTTCTTTTGATCTGCAAAATAAATGGGTAAAGGCTTTCTCTGAAATAATTTCCTACACTGCAGCCAGCAAAAGTCCCAGTCATACTGAATCAACTGCGAATTGCTCTTTATCCTCTGGGTCCGTGGATAACTCTAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTATCTAGTGCTGTAAGTTCGTCCAGCCAGGGTTCTTATCCTGAAGATTTTGATGCCCTGGGTGATGTTTTTATTTGGGGAGAAGGTCTTGGCAATGGAATTCTTGGTGGTGGTGTCCATAGAGTTGGAACCTTATCTTGTTCTGAAATGGATGCATTCCTCCCCAAGGCATTGGAATCAAAAGTAGTTCTAGATGTTCATAGTATTGGTTGTGGGTACAGACATGCTGTTCTAGTTACTAAGCAGGGAGAGATATTTAGTTGGGGGGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAGTGGATGTTTTTCACCCTAAACTCATTGACACTCTTAGTGGCATGAATATTGAGTTAGTAGCATGTGGAGAATATCATACTTGTGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGTTCACAATTCTGGCTTGCTTGGACATGGAAATGAAGTCAGTCACTGGATTCCTAAGAAAGTAAGTGGTAACTTGGAGGGTTTACGTGTATCATATGTGTCCTGTGGACCTTGGCACACTGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGCGATGGAACTTTTGGTGCCTTAGGCCTTGGAGATCATAGGAGCACAAATATTCCTCGGGAAGTAGACACTTTGAAAGGGTTGAGAATAACCAAGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATGAATGAATCTGTGGAATCTTCTACACACTCATCTAGTGGAAGACTCTTCACCTGGGGTGATGGAGATAAAGGCCAACTTGGACATGGTGATAGGGAACCTAGACTAGCTCCTGATTGTGTAATTGCATTGAGTACTGAAAACATTTGCCGAGTGGCTTGTGGTGACAGTCTTACAATTGCTTTGACAACATCAGGACATGTATATTCAATGGGAAGTACAGCTTATGGACAACTTGGTTGTCCTGCAGCTGATGGAAAAGTCCCAACACGCGTTAGAGATAAAATTGCTGACAGTTTCATAGAAGATATTGCGTGTGGTTCATATCATGTTGCAGCCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTGGGTCATGGAGACAATGATCACAAGAATAAACCCACACTTGTTGAGTTTTTGAAAGATAAGCAAGTGAAAAGTGTTGTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTCTTGATCATTCTGCATGTTGTGGTTGTCGTAATCCATTTAATTTCAGAAGAAAGCGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCATGCACCAGCAAGAAATCTATAAAAGCTTCCCTTGCTCCCAATTCCAACAAGCCATACCGGGTTTGTGATGATTGTTATCTTAAACTTAAGAAAGCTGCTGAATCAGGACCGGTGGTTCAAACTCCTAGCTTGAGATGTGTAAGTTTGCAAGACAGTAGAGCCACTAAAACACAGGGAACACTTTTAAGACTTTCATCTCTTGGATCTATTGGTCAAGCAGAAAGCAGTCAACCGAAGCTTCCAGATTCACATGATAGCCATCTTTTCCCAGCTTTGAACGGAAAATTACAGATGGGGGGGTTTGCTTCTTCAAAATCAGCAAATTCTAATTCTAGGGATTCTAAGAAACACCTTTCAGTTTCTGAGCCTGCTGCAAGAATATCTTGTCAATCAGCATCTCCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTATGAATATGTCAATGACGATTTAAAACACAGAAATGATATTCTAAGTCAAGAAGTTTTAAGTTTAAAGACACAGGTTGAAGATCTTACTCATAAGTCAAAGAGTCTTGAGGCTGAACTTGAGAGAACGTCAAAGCATTTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGACTGTACAGTTGAAGGAAATGGTGCAAAGACTGCCAGAAGGACATAACGCTGACTCCAGTGCAGAGTCCTGTGCTGAAACCACTAATAGTATTCTAAATCAGTCCATAGATGAAATCCATTTAACAAACACTCTCACCCCCAAAAATGAAGGCAGCAGCAATGTAGCAAATCAGATATTACCTAATGGTGTAAGAACACAAAGTGGAAAGGCAGAGTGGGTGGTGCAAGATGAACCAGGTGTGTACGTAAGTTTGTCATCCCTGTCATGTGGTGGTAATGAGCTTAAGCGTGTTCGCTTCAGTAGAAGGCATTTCACCGAAGAACAAGCTGAAAAGTGGTGGGCTGAAAATGGAACCAAAATATTGGAGCGGCACAATATAGTTGCTTTATAG 3060 0.4183 MADPQKTAPGERDIEQAITSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLSTVSKIIPGQRTAIFHRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALVARGNSRKWRFESRTDSLCSDSPKSGTQRSTPSFSPFVCNNFLHGDTGSGSFDLQNKWVKAFSEIISYTAASKSPSHTESTANCSLSSGSVDNSSNRNSASEAFRVSLSSAVSSSSQGSYPEDFDALGDVFIWGEGLGNGILGGGVHRVGTLSCSEMDAFLPKALESKVVLDVHSIGCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEVDVFHPKLIDTLSGMNIELVACGEYHTCAVTYSGDLYTWGDGVHNSGLLGHGNEVSHWIPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGLGDHRSTNIPREVDTLKGLRITKVACGVWHTAAVVEVMNESVESSTHSSSGRLFTWGDGDKGQLGHGDREPRLAPDCVIALSTENICRVACGDSLTIALTTSGHVYSMGSTAYGQLGCPAADGKVPTRVRDKIADSFIEDIACGSYHVAALTSKAEVYTWGKGLNGQLGHGDNDHKNKPTLVEFLKDKQVKSVVCGSNFTAVVCLHKWIPSLDHSACCGCRNPFNFRRKRHNCYNCGLVFCKSCTSKKSIKASLAPNSNKPYRVCDDCYLKLKKAAESGPVVQTPSLRCVSLQDSRATKTQGTLLRLSSLGSIGQAESSQPKLPDSHDSHLFPALNGKLQMGGFASSKSANSNSRDSKKHLSVSEPAARISCQSASPVSSKSSPRQSYEYVNDDLKHRNDILSQEVLSLKTQVEDLTHKSKSLEAELERTSKHLKEVTAVAADEAGKCKSAKEVIKSLTVQLKEMVQRLPEGHNADSSAESCAETTNSILNQSIDEIHLTNTLTPKNEGSSNVANQILPNGVRTQSGKAEWVVQDEPGVYVSLSSLSCGGNELKRVRFSRRHFTEEQAEKWWAENGTKILERHNIVAL* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0902 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 309 IPR000408 -
Apr3g0902 1019 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 711 IPR013083 -
Apr3g0902 1019 Pfam FYVE zinc finger 638 704 IPR000306 GO:0046872
Apr3g0902 1019 MobiDBLite consensus disorder prediction 774 818 - -
Apr3g0902 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 482 533 IPR000408 -
Apr3g0902 1019 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1013 - -
Apr3g0902 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 310 358 IPR000408 -
Apr3g0902 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 587 634 IPR000408 -
Apr3g0902 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 361 412 IPR000408 -
Apr3g0902 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 533 582 IPR000408 -
Apr3g0902 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 481 530 IPR000408 -
Apr3g0902 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 417 465 IPR000408 -
Apr3g0902 1019 Gene3D - 475 644 IPR009091 -
Apr3g0902 1019 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1013 - -
Apr3g0902 1019 MobiDBLite consensus disorder prediction 798 818 - -
Apr3g0902 1019 CDD PH_PLC_plant-like 12 122 - -
Apr3g0902 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 362 416 IPR000408 -
Apr3g0902 1019 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 296 306 IPR000408 -
Apr3g0902 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 310 361 IPR000408 -
Apr3g0902 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 417 468 IPR000408 -
Apr3g0902 1019 SUPERFAMILY FYVE/PHD zinc finger 638 709 IPR011011 -
Apr3g0902 1019 ProSiteProfiles BRX domain profile. 960 1015 IPR013591 -
Apr3g0902 1019 SMART fyve_4 634 705 IPR000306 GO:0046872
Apr3g0902 1019 Pfam Transcription factor regulating root and shoot growth via Pin3 959 1014 IPR013591 -
Apr3g0902 1019 Coils Coil 823 864 - -
Apr3g0902 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 534 585 IPR000408 -
Apr3g0902 1019 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 455 465 IPR000408 -
Apr3g0902 1019 Coils Coil 879 899 - -
Apr3g0902 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 586 637 IPR000408 -
Apr3g0902 1019 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 642 704 IPR017455 -
Apr3g0902 1019 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Apr3g0902 1019 SUPERFAMILY RCC1/BLIP-II 247 639 IPR009091 -
Apr3g0902 1019 SUPERFAMILY PH domain-like 13 121 - -
Apr3g0902 1019 Gene3D - 13 128 IPR011993 -
Apr3g0902 1019 PRINTS Chromosome condensation regulator RCC1 signature 312 328 IPR000408 -
Apr3g0902 1019 PRINTS Chromosome condensation regulator RCC1 signature 362 378 IPR000408 -
Apr3g0902 1019 PRINTS Chromosome condensation regulator RCC1 signature 403 419 IPR000408 -
Apr3g0902 1019 PRINTS Chromosome condensation regulator RCC1 signature 419 433 IPR000408 -
Apr3g0902 1019 PRINTS Chromosome condensation regulator RCC1 signature 523 541 IPR000408 -
Apr3g0902 1019 PRINTS Chromosome condensation regulator RCC1 signature 581 602 IPR000408 -
Apr3g0902 1019 Gene3D - 373 472 IPR009091 -
Apr3g0902 1019 Gene3D - 179 372 IPR009091 -
Apr3g0902 1019 MobiDBLite consensus disorder prediction 194 216 - -
Apr3g0902 1019 Pfam Transcription factor BRX N-terminal domain 874 902 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0902 Apr-Chr3 23417876 23427216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0902 958 1016 Major Intrinsic Protein MIP AT1G31880 52.542 2.22e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0902 - - pvu:PHAVU_003G066900g 1455.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0902 3 23417876 23427216 Apr3g0902 3 23417876 23427216 ECH