Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0899 ATGTCCAGCCGAAGATCTCGTTCGAGGCAATCTGGTGTTTCCACTGAGATCACTGACGCTCAGATTACTGATCTCATCTCCAAATTACAACAACTTATCCCTGAGCTACGTGCAAGGCGTTCCGACAAGGTTTCAGCTGCTAAGGTGTTGCAGGAGACTTGCAACTACATCAAAAGCTTGCACAAAGAGGTTGATGATTTAAGTGACCGATTGTCACAACTCTTGGCCACCACAGACTCCAACAGTGCTCAAGCAGCTATTATTAGGAGCTTACTTATGTAA 282 0.4539 MSSRRSRSRQSGVSTEITDAQITDLISKLQQLIPELRARRSDKVSAAKVLQETCNYIKSLHKEVDDLSDRLSQLLATTDSNSAQAAIIRSLLM* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0899 93 Coils Coil 57 77 - -
Apr3g0899 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Apr3g0899 93 Gene3D - 19 89 IPR036638 GO:0046983
Apr3g0899 93 CDD bHLH_AtPRE_like 17 77 - -
Apr3g0899 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Apr3g0899 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Apr3g0899 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Apr3g0899 93 Pfam Helix-loop-helix DNA-binding domain 21 61 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0899 Apr-Chr3 23237889 23239006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0899 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 3.19e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0899 HLH 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0899 - - gmx:100791371 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0899 3 23237889 23239006 Apr3g0899 3 23237889 23239006 ECH
Apr3g0899 3 23237889 23239006 Apr1g0901 1 12215097 12216332 ECH
Apr3g0899 3 23237889 23239006 Apr6g0189 6 1895836 1897432 ECH