Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0896 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGATGACCATCAACCTCCTCCTTCGCTCAACTCATTTCTAGGCAAGAGATCTATGTCATTTTCAGGGCTTGAACTTGGAGAAGAAGCTAATGTTGAGGAGGAGTTGTCTGATGATGGATCACAGGCAGGGGAGAAGAAAAGGAGGCTTAACATAGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGTTGGCAAGGGCTCTTGGGTTGCAACCTAGACAGATTGCTATATGGTTCCAAAACAGAAGGGCTAGGTGGAAGACTAAGCAGTTAGAGAAGGACTATGATCTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACTGAGATATTGGCACTGAAAAGTAGAGAACCAACTGAATCCATCAACCTCAACAAAGAAACTGAGGGCTCAAGCAGCAACAGAAGTGAGAACAGTTCAGATATCAAGTTGGATATCTCAAGGACCCCAGCTATTGACAGTCCTCTATCCACTCAGCAAAACAGCAGAACCCTCTTTCCACCTTCTGCAAGACCAACAGGAGTGGCTCAGCTTTTTCAAACTACTTCAAGGCCTGAACTTCAGTGCCAAAAGATTGATCACATGGTGAAAGAAGAGAGCTTCAGCAACATGTTTTGTGCCATTGATGATCAATCTGGCCTTTGGCCTTGGTTGGAACAGCAACACTTCAATTGA 792 0.4369 MAFFPANFMLQTPHQDDHQPPPSLNSFLGKRSMSFSGLELGEEANVEEELSDDGSQAGEKKRRLNIEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSDIKLDISRTPAIDSPLSTQQNSRTLFPPSARPTGVAQLFQTTSRPELQCQKIDHMVKEESFSNMFCAIDDQSGLWPWLEQQHFN* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0896 263 Pfam Homeobox associated leucine zipper 115 155 IPR003106 GO:0006355|GO:0043565
Apr3g0896 263 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Apr3g0896 263 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Apr3g0896 263 Coils Coil 107 155 - -
Apr3g0896 263 Gene3D - 52 121 - -
Apr3g0896 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 263 - -
Apr3g0896 263 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Apr3g0896 263 SMART HOX_1 58 119 IPR001356 GO:0003677
Apr3g0896 263 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Apr3g0896 263 SUPERFAMILY Homeodomain-like 53 117 IPR009057 -
Apr3g0896 263 CDD homeodomain 60 116 IPR001356 GO:0003677
Apr3g0896 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 263 IPR045224 GO:0003700
Apr3g0896 263 MobiDBLite consensus disorder prediction 8 30 - -
Apr3g0896 263 MobiDBLite consensus disorder prediction 12 30 - -
Apr3g0896 263 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Apr3g0896 263 MobiDBLite consensus disorder prediction 42 61 - -
Apr3g0896 263 MobiDBLite consensus disorder prediction 160 210 - -
Apr3g0896 263 MobiDBLite consensus disorder prediction 163 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0896 Apr-Chr3 23179915 23182925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0896 1 263 Homeobox Transcription Factor Family AT1G69780 61.695 2.18e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr3g0896 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0896 K09338 - gmx:100801479 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0896 3 23179915 23182925 Apr3g0896 3 23179915 23182925 ECH