Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0895 ATGAAGAAGCAGCAGTGCAGTGAAGAATCCAAGAAGAAGGAACGTCACATTGTAACTTGGACTCGAGAGGAGGATGATATACTTAGAGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAATTCGAGGACAAAACGACAAGACAGTGCAGAAGGAGATGGTACACTTACTTAAACTCTGATTTTAAGAGAGGTGGATGGTCACCTGAGGAAGACAGGCTCTTATGTGAGGCTCAAAAACTATTTGGTAACAGATGGACTGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGGTTCTCCACACTATGCAGAAAAAGAGAAAAAATTGCAGCTTTAGCCAAAGAGAACAGCACTTCATACATCAATTCAAATAACAAGAGGATTATTTTTCCAAATGGTTATAATACAGATGCAACCTTAAAATCTGCAGTACCTATTAAGAAGATGAGGAGGGCCCATATTCCTGATGATACAGAAAAGATCAAATTTGAGGACAGATCACATTTAAGAAATAAAGTTCAAGTAAATCAGCAGCCAAGCCCAAGAACACCATTTGCAGTATTAGCTGAAAATTCCCTTAATGCAAACAATTTGCCAGACCAGCATGATGTTTGCGCTTCCAAGTTTAACGGTTCGGCCCAAAATAACAATATTCAAGGAACATTCCTCAAAAAGGATGACATGGACCCAAGTTTTGAAAATGCAAGAAAGGTTCTTAAAGAGTTTCTGAACATAACCAAAGAATCAGATATTGCTGGACATAAGATTCCAGAGGTACCACTTGTAGATCTTAAAGAATTGATTGAGGACTTGAAGAGTGGTAATAAGGAAGGCCAGCCTTGTTGGAGGCAAGTGGAATGCTATGAAGACTCTCCAGGCAGTTCTGAATACAGTACAGGATCAACTCTCCTGCCATGGTCAGCTCGTAATACTTTGGAGCACTCATTGCATCAGGGTATTGGAATTGAAATGAAGTCTAGACAATTTGGAGATGAAAAAGGAGTAGGTGGAGGTGAGAAAGGGGTGCATTCTACCACAAATGTAGATCAAAGAAAGAAACTTCTTAAGGAAAACACTAGGGATGGAATCTCCATCCATCAAGGCAAGTGCCAACCCGTCACAACCGCCACCCTGCAAAAGAGCCTTACTACCTAG 1188 0.404 MKKQQCSEESKKKERHIVTWTREEDDILREQIGIHGTENWAIIASKFEDKTTRQCRRRWYTYLNSDFKRGGWSPEEDRLLCEAQKLFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKREKIAALAKENSTSYINSNNKRIIFPNGYNTDATLKSAVPIKKMRRAHIPDDTEKIKFEDRSHLRNKVQVNQQPSPRTPFAVLAENSLNANNLPDQHDVCASKFNGSAQNNNIQGTFLKKDDMDPSFENARKVLKEFLNITKESDIAGHKIPEVPLVDLKELIEDLKSGNKEGQPCWRQVECYEDSPGSSEYSTGSTLLPWSARNTLEHSLHQGIGIEMKSRQFGDEKGVGGGEKGVHSTTNVDQRKKLLKENTRDGISIHQGKCQPVTTATLQKSLTT* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0895 395 Gene3D - 71 139 - -
Apr3g0895 395 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Apr3g0895 395 SUPERFAMILY Homeodomain-like 16 110 IPR009057 -
Apr3g0895 395 MobiDBLite consensus disorder prediction 340 362 - -
Apr3g0895 395 PANTHER TRANSCRIPTION FACTOR MYB88 237 321 - -
Apr3g0895 395 PANTHER TRANSCRIPTION FACTOR MYB88 3 238 - -
Apr3g0895 395 CDD SANT 72 113 IPR001005 -
Apr3g0895 395 PANTHER MYB PROTEIN-RELATED 237 321 - -
Apr3g0895 395 PANTHER MYB PROTEIN-RELATED 3 238 - -
Apr3g0895 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 63 IPR017930 -
Apr3g0895 395 Pfam Myb-like DNA-binding domain 20 80 - -
Apr3g0895 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Apr3g0895 395 CDD SANT 19 63 IPR001005 -
Apr3g0895 395 Gene3D - 7 68 - -
Apr3g0895 395 ProSiteProfiles Myb-like domain profile. 20 63 IPR001005 -
Apr3g0895 395 SMART sant 16 65 IPR001005 -
Apr3g0895 395 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0895 Apr-Chr3 23112552 23124738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0895 7 294 MYB Transcription Factor Family AT2G02820 55.063 4.71e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g0895 Myb_DNA-bind_6 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0895 K09422 - gmx:100807667 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0895 3 23112552 23124738 Apr3g0895 3 23112552 23124738 ECH