Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0889 ATGGGAAGACAAAGTCCTGGAAAATGGATCAGAAACTTATTTCTCGGGAAGAAATCATCGAAGTCTAAGTCATCCAAAGAGAAAGATATCTATAAACCTTCAAGTAAGAAGGATGTTATGGTGGTATCTTCCGAGGCATCAATTTCTCATCCAACTGTTATATCACCTCCATCATTTGGAATTAGTGCTACTAAAGAAGTGTTATCCACAAAGGAAGTAGTTAGCATATCATCAAATGAAAGGGTAATTCTTTCAATTGGAGACAAACAAGCCAATGCACCAGCTCTTGTTAATTTTGGTTCTGGCGACCATCATGAGAAAATCAGGCAAACAGAAGCAGCTATAACAGTTCAGGCTGCTGTTAGAGGCTGTCTGGCACGTACAACATTTCAAACACTCAAATGTATCATACCACTGCAAGCTCATATTCGCGGCCAGTTGGTTCGAAGACAAGCTGTTTCTGCTTTATATTGTGTGAATGCAATTGTTAAATTTCAAGCATTGGCTCGTGGTTACAAGGTTAGGCACTCTGGTATTGGGCTTGCAGTTCAGAAAATTTGTAAGGTTGCTATACGTCCAAATTCTATTGGAGCAGTTACATCCACACAGGCAGCAAAACTGTCTGCTAATATCTTTGTTAACGAGCTGCTGGCTTCATCAACCTCTGCAGTTCTTGTGTATCTCAAATTTATTCCTGGAGAACCTAACTTGTCCAGGGCGTGGCTTGATCGCTGGACGAAATCACACTTTTGGGCTCCTCATCCAGAATTGAAAAAGCCTGACTCAATGTCCGATAAGAAGAATGGCACTTGTCAAACAATTGAAACTAATGAGGGACAAGTCAAAAGAAATGCCAGGAAAGCATCTGCAGTGAGGGTTGGTAATGATTCAGCTTCAGATTCTAACAAAAATAACCGGCATCCAAGAAAGGATTCAAAACTCCCATTGCATTCAGCTAAGGAACATCCACAAAAGGAACAAGAGAAAAAGAGTTTTAAAAAAGCTCAAATTCAAAATGCTTTCGATAAATCTGAGGTTTCTAATAATGAGAACAGTACAAACATGACAAGAAAAGATTCAGATCATACAGTCAATGATATCCCAGAGAAATCATCAGAGAAGATGAATGATTTGACAGTTTCAAGGTCAAAACAGTTTGATCATACAGACAATGAGTCATGTAAAGATAATAATGTTCTCTTGCAGCCAATCTTAATGAATGTTGAAGATGGAGGAGTCATTGAAGACTTGAATATTGGTGACAGTTGTATGAGTAATGTAAGTTTTAAGAATTGCCAGAGAAGAGCTTCCCTGCCTGCTAATTTTATGGATCATGAAAATCTGTTACATAACACTCCAAGACTTCCCAGTTACATGGCTCCCACTGAATCTACAAAAGCTAAGCTAAGAGGACAAGGCTCCCCGCGGTTCGCCACCGATTTCGCAGACAAAAATAGTATAACCCGGCGACTTTCACTTTCATCTTCGCTTAATGGCAAGCTTGGTTCATTTTCTCCACGATCAGATCGATTGGCAGCCTTGAGCAGCAAAGGAATGATAAGGAGTGATAGATCTCTATCATCTTCAAGGGATGGTACTGATAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1632 0.3989 MGRQSPGKWIRNLFLGKKSSKSKSSKEKDIYKPSSKKDVMVVSSEASISHPTVISPPSFGISATKEVLSTKEVVSISSNERVILSIGDKQANAPALVNFGSGDHHEKIRQTEAAITVQAAVRGCLARTTFQTLKCIIPLQAHIRGQLVRRQAVSALYCVNAIVKFQALARGYKVRHSGIGLAVQKICKVAIRPNSIGAVTSTQAAKLSANIFVNELLASSTSAVLVYLKFIPGEPNLSRAWLDRWTKSHFWAPHPELKKPDSMSDKKNGTCQTIETNEGQVKRNARKASAVRVGNDSASDSNKNNRHPRKDSKLPLHSAKEHPQKEQEKKSFKKAQIQNAFDKSEVSNNENSTNMTRKDSDHTVNDIPEKSSEKMNDLTVSRSKQFDHTDNESCKDNNVLLQPILMNVEDGGVIEDLNIGDSCMSNVSFKNCQRRASLPANFMDHENLLHNTPRLPSYMAPTESTKAKLRGQGSPRFATDFADKNSITRRLSLSSSLNGKLGSFSPRSDRLAALSSKGMIRSDRSLSSSRDGTDKLIQPQWRR* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0889 543 PANTHER IQ-DOMAIN 5-RELATED 1 540 - -
Apr3g0889 543 MobiDBLite consensus disorder prediction 302 336 - -
Apr3g0889 543 MobiDBLite consensus disorder prediction 520 535 - -
Apr3g0889 543 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 540 - -
Apr3g0889 543 MobiDBLite consensus disorder prediction 355 391 - -
Apr3g0889 543 Pfam Protein of unknown function (DUF4005) 447 522 IPR025064 -
Apr3g0889 543 SMART iq_5 132 153 IPR000048 GO:0005515
Apr3g0889 543 SMART iq_5 157 179 IPR000048 GO:0005515
Apr3g0889 543 SMART iq_5 109 131 IPR000048 GO:0005515
Apr3g0889 543 MobiDBLite consensus disorder prediction 337 354 - -
Apr3g0889 543 Pfam IQ calmodulin-binding motif 160 175 IPR000048 GO:0005515
Apr3g0889 543 Pfam IQ calmodulin-binding motif 134 151 IPR000048 GO:0005515
Apr3g0889 543 Pfam IQ calmodulin-binding motif 111 130 IPR000048 GO:0005515
Apr3g0889 543 Gene3D - 109 156 - -
Apr3g0889 543 MobiDBLite consensus disorder prediction 255 391 - -
Apr3g0889 543 MobiDBLite consensus disorder prediction 515 543 - -
Apr3g0889 543 ProSiteProfiles IQ motif profile. 110 134 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0889 Apr-Chr3 23031156 23040790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0889 1 543 IQD Protein Family AT2G02790 32.237 5.47e-72 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0889 - - gmx:100800688 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0889 3 23031156 23040790 Apr3g0889 3 23031156 23040790 ECH
Apr3g0889 3 23031156 23040790 Apr1g0896 1 12110853 12118354 ECH
Apr3g0889 3 23031156 23040790 Apr9g3019 9 37036015 37043413 ECH