Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0885 ATGGGAGAGGTTGGAGAAGAAAATGAGAGGTTGAAGCTTTCATTGGCACGGGTTGTAAGGGATACAAGTAGTGACGAAGAAAACGAAGAAAGTGAGGAACTTATCTCCCTTTCTCTTGGAATTTCATCCAAAGGCCAACAGCATGAGAAGAAGAATAGCAAAGGAACTGAAAGGATAAGTGAAAGTGAGGATTTAAATAAAGGACTTGATCTTGGGTTAGACATCAGGTTTGACCCTTCATTTCAGGTTGAAGCCACAAAAAATCCCAACACTGAAAGTAGCTGTGATTATGAAAGGAATGAAGAGAATATCAGGGACATGTGGCCACCCAGTAAAGTTCTCAAGACAAAAAGAATTGGGGATAAAAGTGAAGCTTCTCAACATTCTCAGCTTAAGAAAGCTAGGGTTTGTATCAGAGCCAGATGTGATACCCAAACGATGAATGATGGTTGCCAATGGAGAAAATATGGACAGAAAATGGCAAAAGGGAATCCGTGCCCCCGAGCGTACTATCGATGCACTGTCTCTCCCTCTTGTCCCGTGAGAAAACAGGTTCAAAGATGTGCTGAAGACATTTCAATCTTGATTACCACATATGAAGGAACCCACAACCATCCACTGCCAACTTCAGCCACCACCATAGCCTACACAACTGCTGCGGCCGCTTCAATGCTTCAGTCTCCCTTATTGAGCTCACAGGACCTACCCAATTCAGATTCAATTTCCCTTATCTACCCTGGGGCTTCTGATAACATGAATGCCCTAAAATTCACATCAAGCTATCAGCAATTTTCAAAACCACAACAGCTATACTATCACAACTCATATATTTCAATCTCCAATTCCCACCCCACAATCACTCTTGACCTTACCACACCTCCAACTTCACCTCAAAACGGAAAATTCACCCCAGGCTTGTCTTTCATGCCAAAATATTCATCAACAAACAATTTTTCCTCAAGTACTAACTCTTCTTTGCAATCTAGTATGCTACAGCCGCCTTATTGGAATTCTTATAATGAATACTTCAACTATGGGGGATTGATCACCCAAACTAGAAACCAAAATGGTTGCTTTATGAACACTGGAAAACTACCATTTCAGGGGCATCTCTACCAACCCACTTACACTAGAAGCTGTGCATTTTCTCAACAACCTTTACCAAATTCCACTGCAGCAGCAACAAAGGCAATCACATCTAACCCAAAATTTCAATCTGCACTAGCGGTTGCTCTCCCAACATACGTTGGTAATGGAGCTGCTAGTGGTGAGGTAAAAGAAAATCATGTTGGGGTCGAAAGTGAAGCTTTGAACTTAAATCTAGGTGGAGAGATGCCATACACAATGAAAATGCATCTTCAAGGCGCATGA 1371 0.4194 MGEVGEENERLKLSLARVVRDTSSDEENEESEELISLSLGISSKGQQHEKKNSKGTERISESEDLNKGLDLGLDIRFDPSFQVEATKNPNTESSCDYERNEENIRDMWPPSKVLKTKRIGDKSEASQHSQLKKARVCIRARCDTQTMNDGCQWRKYGQKMAKGNPCPRAYYRCTVSPSCPVRKQVQRCAEDISILITTYEGTHNHPLPTSATTIAYTTAAAASMLQSPLLSSQDLPNSDSISLIYPGASDNMNALKFTSSYQQFSKPQQLYYHNSYISISNSHPTITLDLTTPPTSPQNGKFTPGLSFMPKYSSTNNFSSSTNSSLQSSMLQPPYWNSYNEYFNYGGLITQTRNQNGCFMNTGKLPFQGHLYQPTYTRSCAFSQQPLPNSTAAATKAITSNPKFQSALAVALPTYVGNGAASGEVKENHVGVESEALNLNLGGEMPYTMKMHLQGA* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0885 456 SMART WRKY_cls 147 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g0885 456 MobiDBLite consensus disorder prediction 19 64 - -
Apr3g0885 456 SUPERFAMILY WRKY DNA-binding domain 140 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr3g0885 456 Pfam WRKY DNA -binding domain 148 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g0885 456 ProSiteProfiles WRKY domain profile. 142 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g0885 456 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 428 IPR044810 GO:0003700
Apr3g0885 456 PANTHER WRKY TRANSCRIPTION FACTOR 72B 5 428 - -
Apr3g0885 456 MobiDBLite consensus disorder prediction 47 64 - -
Apr3g0885 456 Gene3D WRKY domain 132 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0885 Apr-Chr3 22968327 22971210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0885 1 436 WRKY Transcription Factor Family AT1G18860 35.534 2.49e-60 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr3g0885 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0885 - - gmx:102666229 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0885 3 22968327 22971210 Apr3g0885 3 22968327 22971210 ECH
Apr3g0885 3 22968327 22971210 Apr1g0892 1 12011602 12017680 ECH
Apr3g0885 3 22968327 22971210 Apr9g3022 9 37059523 37063938 ECH