Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0883 ATGTTGAACTTGCAGCTGCAGCTTCACTCACCACCATCACCGTTATCATCATCATCATCCTTATCTTCTTCTTCTTCTTATGCTTCCCTTAAGCTATTCCCAAACCACTCCTTCTCTCCAAACACTCTTCCTTTTAACACTCCAAAACCCTTCACCCTCAGATGCCGCCATTCAGACCTCTTCGCCCAGAACACCTTGGCTTCCACACCACGACCTGCAAGACCCACTCCTTCTGTTGGAGCTTTGCCACCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAAGCTGCGCTTACATTGACTCCTAGACCTCCGGAATTCGCCCCATTGGATTCAGGGGCATTCAAAATATCTAGGGAAGGTTATGTGCTACTTCAGTTTGCACCTGCTGTTGGCCAGCGCCAATATGATTGGAATAGAAAGCAGGTTTTTTCGCTATCAGTGGGTGAAATGGGAAGTGTGATTAGCCTTGGTACAAGGGAGTCTTGTGAATTTTTTCACGATCCTTTGAAGGGAAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGTTGGAGCCTTTCCCAGATGGTTCTGGTCACTTCTTTAACTTCAGTGTCCAAAACAAGCTTGTGAACGTGGATGAAAATATGTCAATCCCTGTTACAAAAGCAGAGTTAGCAGTTTTGAGCTCAACTTTCAATTTTATCATGCCATACCTTCTTGGTTGGCATACTTTCGCAAACTCCATAAAGCCAGATGATTATAATGGAGAGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACCGATAG 807 0.4374 MLNLQLQLHSPPSPLSSSSSLSSSSSYASLKLFPNHSFSPNTLPFNTPKPFTLRCRHSDLFAQNTLASTPRPARPTPSVGALPPRVYVGYSIYKGKAALTLTPRPPEFAPLDSGAFKISREGYVLLQFAPAVGQRQYDWNRKQVFSLSVGEMGSVISLGTRESCEFFHDPLKGKSDEGKVRKVLKLEPFPDGSGHFFNFSVQNKLVNVDENMSIPVTKAELAVLSSTFNFIMPYLLGWHTFANSIKPDDYNGENNANPRYGGDYEWNR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0883 268 SUPERFAMILY ssDNA-binding transcriptional regulator domain 84 268 IPR009044 GO:0003677|GO:0006355
Apr3g0883 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 6 268 - -
Apr3g0883 268 Gene3D Transcriptional Coactivator Pc4; Chain A 80 257 IPR009044 GO:0003677|GO:0006355
Apr3g0883 268 MobiDBLite consensus disorder prediction 1 20 - -
Apr3g0883 268 Pfam Whirly transcription factor 92 226 IPR013742 GO:0003697|GO:0006355|GO:0006952
Apr3g0883 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 6 268 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0883 Apr-Chr3 22941460 22944533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0883 6 268 Whirly Transcription Factor Family AT1G14410 60.456 3.60e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Apr3g0883 Whirly 3.1e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0883 - - gmx:100789252 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0883 3 22941460 22944533 Apr3g0883 3 22941460 22944533 ECH
Apr7g1453 7 21659196 21664041 Apr3g0883 3 22941460 22944533 PCT