Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0882 ATGAATTCCTACCAACTTTACATGTTCTACTCTCCATTCCGCGTTCTGACATCTCCATGCACAAAGCCACCAAACACGCCTCTCTTTCTTTTGTTTCATGCCAACACAAACTCTATCTTCTTCCCCTCACCAACCCTCCTTTGTTCGTCCCTCAGCGATGACTCCTTTTCCACCCCTAAACCAAACCAGTTGGGTTACAATCCTTCCGAGGAACTGTACGGGCTGGAGGTCGAACTCAAGCCAAGCAAGGCTAACTCTCATACACCAGAACCAAAGTCTTGGTTTGGTCCACATGGACAGTATATCAAAGAGCTACCTTGTCCAAGTTGCCGGGGAAGAGGTTATACTCCCTGTTCAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTCATGGAAAGGGTATACTGACTTGCAACCAGTGCTATGGAGATTGTGTTATATGGGAAGAATCAATTGACGAACAACCATGGGAGAGAGCCCGTTCTATTTCTCCACTTAAAGTGATGGAAGATGATGAAGTTGACAAGTTAGACATAAAGCTAGATGTGAAGAAAAAATCCAAGCGTGTCTACCAGTCACCATCTCCAGAAGTCGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGTAACCGAATGAAGATTATCCATCGGGATCCCAAGCTTCGGGCACAGCGAGTGGCTGCTATTAAGAGGGCCAAGGGAACTGTTGCAGCAAGAAAGCACATTTCCAAAGTTATGAAAGCTTTCTTTAGTGATCCAATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGTGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGACGAAACTACTGTCCCGAACTCAAGGATAGTTTGATTGACCGGCGATTCACATGTAGTTTATGTGGGGAAAAGGGCCACAACAGAAGGACATGTAGAAAGTTAAGAATAAGCCATAGCAATGGGAAAGTTATAAAACACCATAGATGTAAAATATGTCGCCAATATGGCCATAACAGCAGGACATGCTCTCAAGTTGTTCCTAATAAACGAAGGGTTAAGGCTTCTCGAAAAGCATACCAATGTCGGTTATGCCAGAAAGAGGGACATAATATTAGGACATGTCCTAGTAGAGGTGTTGTAACTGAACATCCATAA 1185 0.4354 MNSYQLYMFYSPFRVLTSPCTKPPNTPLFLLFHANTNSIFFPSPTLLCSSLSDDSFSTPKPNQLGYNPSEELYGLEVELKPSKANSHTPEPKSWFGPHGQYIKELPCPSCRGRGYTPCSECGIERSRPDCPKCHGKGILTCNQCYGDCVIWEESIDEQPWERARSISPLKVMEDDEVDKLDIKLDVKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSNRMKIIHRDPKLRAQRVAAIKRAKGTVAARKHISKVMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRNYCPELKDSLIDRRFTCSLCGEKGHNRRTCRKLRISHSNGKVIKHHRCKICRQYGHNSRTCSQVVPNKRRVKASRKAYQCRLCQKEGHNIRTCPSRGVVTEHP* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0882 394 ProSiteProfiles Zinc finger CCHC-type profile. 281 296 IPR001878 GO:0003676|GO:0008270
Apr3g0882 394 SMART c2hcfinal6 370 386 IPR001878 GO:0003676|GO:0008270
Apr3g0882 394 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Apr3g0882 394 SMART c2hcfinal6 307 323 IPR001878 GO:0003676|GO:0008270
Apr3g0882 394 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Apr3g0882 394 Pfam Zinc knuckle 369 385 IPR025829 -
Apr3g0882 394 SUPERFAMILY Retrovirus zinc finger-like domains 278 324 IPR036875 GO:0003676|GO:0008270
Apr3g0882 394 Gene3D - 331 392 - -
Apr3g0882 394 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 52 387 - -
Apr3g0882 394 SUPERFAMILY Retrovirus zinc finger-like domains 332 387 IPR036875 GO:0003676|GO:0008270
Apr3g0882 394 Gene3D - 277 324 - -
Apr3g0882 394 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 52 387 - -
Apr3g0882 394 ProSiteProfiles Zinc finger CCHC-type profile. 308 323 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0882 13 389 C2H2 Transcription Factor Family AT5G20220 59.033 5.44e-158 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0882 - - gmx:100800156 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0882 3 22925752 22931372 Apr3g0882 3 22925752 22931372 ECH