Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0880 ATGGCGAAATATCATATTTGTTTGGTTTTGGTTTCTTTGGCAGTGTTTATTCCTACTTTGCATGCCAATGTGTTAGAGAAAGATGAGTTTTGGCAGGAACAAGTCAAGGCGTTTACTCCATATTGGCAAGAGAGGGCAAAAGTTGCAAAAATTGACAATGAAGCAGCTTATTTTGCAGATCCATATGCAGTCTCCGGCAACATGACTTTTGCTGTTAGCGAACTCATAGTTGGGAATGAAGCACCACGAAGGAACTTGAAGGGACAAAATGGTAATGTGTGCACGGCCACCAACCCCATTGATAGGTGCTGGAGATGTGATCCCAATTGGGCTAAGAACCGCCAGAAGCTTGCAGATTGTGTTCAAGGGTTTGGCAGAAACACTGTTGGTGGAAAAGGTGGGGCATTCTATGTGGTGACAGATCCCTCAGATGAAGATTTGGTGAATCCAAAACCAGGTACTCTTCGACATGCAGTTACACGTGATGTGCCATTGTGGATCATCTTTTCCCGCAGCATGTTGATTTCCCTCCAACAAGAACTCATAATGAATAGCAACAAGACCATTGATGGAAGAGGAGTTGAAGTTTACATTGCTAATGGCGCTGGCATTACCGTCCAGTATGTCAAGAACATCATCATCCATGGGATTAAAATTTACAACATTCAAGCTTATGGTGGTGGTTTGATCAGAGATTCTGAGACACATTATGGTATAAGGACTAGGAGTGATGGTGATGGAATTTCCATCTATGGTGCTAGCAATGTTTGGGTTGACCATGTTTCCATGAGAAACTGCACAGATGGACTAATTGATGCCATCGTGGGATCCACTGCCATTACCATTTCCAATAGCCATTTCACAGACCACAATGAGGCGATGCTGTTTGGCGCAAGTGACAGCTATGATGATGATAAGATCATGCAGATCACTCTTGCATTCAACCACTTTGGCAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATGGGGTTTTATCCACGTGGTTAACAATGACTACACCCACTGGGAAATGTATGCCATTGGTGGAAGCAAGAACCCTACCATAATTAGTGAGGGCAACCGATTTATTGGTCCTAACAACATTTTTGCTAAGGAGATTACAAAGAGGGAATACTCACCAGAGAACGTGTGGTCAAGTTGGCAATGGAGATCAATCAACGATGAATATATGAATGGAGCATTTTTTGTACAATCTGGGCCAGAGCTTACAAACAGGCCATTCTCAAGGCAAGACATGATAACAGCTAAGCCTGGGAGCTATGTTGGAAGGCTCACACGCTATGCTGGTAGCCTTAGATGTAGAGAGGGCAGTCTTTGTTAG 1344 0.436 MAKYHICLVLVSLAVFIPTLHANVLEKDEFWQEQVKAFTPYWQERAKVAKIDNEAAYFADPYAVSGNMTFAVSELIVGNEAPRRNLKGQNGNVCTATNPIDRCWRCDPNWAKNRQKLADCVQGFGRNTVGGKGGAFYVVTDPSDEDLVNPKPGTLRHAVTRDVPLWIIFSRSMLISLQQELIMNSNKTIDGRGVEVYIANGAGITVQYVKNIIIHGIKIYNIQAYGGGLIRDSETHYGIRTRSDGDGISIYGASNVWVDHVSMRNCTDGLIDAIVGSTAITISNSHFTDHNEAMLFGASDSYDDDKIMQITLAFNHFGKRLVQRMPRCRWGFIHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIGPNNIFAKEITKREYSPENVWSSWQWRSINDEYMNGAFFVQSGPELTNRPFSRQDMITAKPGSYVGRLTRYAGSLRCREGSLC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0880 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Apr3g0880 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Apr3g0880 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Apr3g0880 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Apr3g0880 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Apr3g0880 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Apr3g0880 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Apr3g0880 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Apr3g0880 447 PANTHER PECTATE LYASE 5 447 - -
Apr3g0880 447 Pfam Pectate lyase, N terminus 35 86 IPR007524 GO:0030570
Apr3g0880 447 Gene3D - 97 440 IPR012334 -
Apr3g0880 447 PANTHER PECTATE LYASE 18-RELATED 5 447 IPR045032 GO:0030570
Apr3g0880 447 Pfam Pectate lyase 180 363 IPR002022 -
Apr3g0880 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
Apr3g0880 447 SMART amb_all 172 369 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0880 Apr-Chr3 22883094 22885605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0880 13 447 Polysaccharide Lyase AT1G14420 56.763 3.71e-180 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0880 K01728 - gmx:100798579 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0880 3 22883094 22885605 Apr3g0880 3 22883094 22885605 ECH
Apr3g0880 3 22883094 22885605 Apr1g0891 1 11975435 11978033 ECH
Apr3g0880 3 22883094 22885605 Apr6g0179 6 1751575 1753861 ECH