Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0871 ATGGCGGGTGAGAAGCTTTCTGGCGGTTCAAGCATGACAATTCTACTCCAAAACGAAAGCCTTCCATGCTCCTCTGAGCTTGTTCACTCTCTTTGGCTTCAAAACTCTCAACCTTCTTTTCATGGTTCAAAATCCTTGTTTGATGTTGTGAATGTCACAGATAGGCCCTTGTTCCATGGGCTTGAGAAAGAAGAGAAGGGTGATGATGAGGATTACGAGGTTTGTTTCCGTCAACCTGGTAAGAAGAGGAGGCTTACAAGCGATCAAGTTCAGTTTCTTGAAAGCAACTTTGAGGTAGAAAACAAGCTTGAACCCGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGCATGCAGCCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTTAAGACCAAACAGCTAGAAAAAGAATATGGCATATTGAAAGCTAGCTATGATATACTCAAAAGTGACTATGACAAACTACTTCAAGAGAATGGCAAGTTAAAGGAAGAGGTTAATTCTCTCAAGAACAGATTGCTTCCTCAAGAGAAAGAGGAACATAATTTAGATGATACCTCCTGTGATGCTGTCAATTCACAGCATAAAGAGCGTGAGGATTTGATAATAAATACAGGTTCTGAAAATGGGTCCAAAGGGCCACTTCCTGTTATGGTAATATGCAAACAGGAATATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCGGAGAGTCCACATTTCACTGATGGAAACCAATCCTCATTTGTGGAGCCTGCAGATTCCTCTCATGCTTTGGAACCAGACCACTCAGATTTCTCACAAGATGATGAAGACATCCTAAGCCAAAATCTCTTAACACTGCCATTCTTACCAAAGATTGAAGATGTCTGTTATGGTGAACCACTTGAAAATCCTTGCAGTTTTCGGTTCCCAGTTGAGGATCAAACCTTTTGTTTTTGGTCTTATTGA 963 0.4154 MAGEKLSGGSSMTILLQNESLPCSSELVHSLWLQNSQPSFHGSKSLFDVVNVTDRPLFHGLEKEEKGDDEDYEVCFRQPGKKRRLTSDQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKEYGILKASYDILKSDYDKLLQENGKLKEEVNSLKNRLLPQEKEEHNLDDTSCDAVNSQHKEREDLIINTGSENGSKGPLPVMVICKQEYANSAKSDVLDSESPHFTDGNQSSFVEPADSSHALEPDHSDFSQDDEDILSQNLLTLPFLPKIEDVCYGEPLENPCSFRFPVEDQTFCFWSY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0871 320 CDD homeodomain 79 137 IPR001356 GO:0003677
Apr3g0871 320 Coils Coil 149 176 - -
Apr3g0871 320 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Apr3g0871 320 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Apr3g0871 320 Gene3D - 75 142 - -
Apr3g0871 320 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 320 - -
Apr3g0871 320 MobiDBLite consensus disorder prediction 236 273 - -
Apr3g0871 320 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Apr3g0871 320 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Apr3g0871 320 MobiDBLite consensus disorder prediction 236 257 - -
Apr3g0871 320 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Apr3g0871 320 Pfam Homeobox associated leucine zipper 136 177 IPR003106 GO:0006355|GO:0043565
Apr3g0871 320 SMART HOX_1 78 140 IPR001356 GO:0003677
Apr3g0871 320 SUPERFAMILY Homeodomain-like 72 138 IPR009057 -
Apr3g0871 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 320 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0871 Apr-Chr3 22732593 22734442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0871 22 184 Homeobox Transcription Factor Family AT3G01470 48.795 6.17e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr3g0871 Homeodomain 7.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0871 - K09338 gmx:100804328 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0871 3 22732593 22734442 Apr3g0871 3 22732593 22734442 ECH
Apr7g1493 7 22053973 22055922 Apr3g0871 3 22732593 22734442 PCT
Apr3g0871 3 22732593 22734442 Apr7g1443 7 21542173 21544138 PCT