Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0854 ATGGATCCGGGTGCGATGATGAATGAAGGTTCCTTTGCGAATGATGGGAGTGGCAATACGGTGCCGTATAGCTTAGCGGAGATCTGGCAGTTTCCTCAGGCTATGAATGGCGGCGGAGGATTGGGACTCAGGAGGCCACAGTTCGGACACGCGTTGGGGCAGTTTGGGGATTTCACCACCGGTCCAAACCGGGACGTTTCGGCTACTGGACCCACCGGGGCTGACCAGAGAGCGGCTAACCATGGGCCTGGGCCTGGGCCTGGAGCCAGTAGTAGAAAGAGGCGTGACTCGGAGGATGATTCTGCAAAGGGCGTGTCCACCAGCAATGGCGGTGGCAATGCCGTGAATGAGGGTGATGGAAAACGGGTTAAAGCAACAGGGAACAGGAATGAGGGTGGGGATGGTAAAGTGGAAGGAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAAGCACTAAGCCACCTCCTGAACCTCCTAAACAAGATTACATTCACGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGAGCTAGAAGGGAAAAGATTAGTGAGAGAATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAACTATATCCAATCTCTTCAGCGCCAAGTTGAGTTTTTATCAATGAAGCTTGAAGCGGTGAATTCAAGACTGAACTCTGGCCTTGAAGCATTTGCTTCTAAAGATTTTGGTCAGCAAACATTTGATCCAGCTATAACGTTCGGTACGCAAGTGCCAAGAGAGTATAGCAGAGGTTCTTCACCAGAGTGGTTACATATGCAGGTAGGAGGTGGTTTTGAAAGAACAACGTAG 876 0.5011 MDPGAMMNEGSFANDGSGNTVPYSLAEIWQFPQAMNGGGGLGLRRPQFGHALGQFGDFTTGPNRDVSATGPTGADQRAANHGPGPGPGASSRKRRDSEDDSAKGVSTSNGGGNAVNEGDGKRVKATGNRNEGGDGKVEGEASSGKPAEQSTKPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGLEAFASKDFGQQTFDPAITFGTQVPREYSRGSSPEWLHMQVGGGFERTT* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0854 291 Coils Coil 218 238 - -
Apr3g0854 291 SMART finulus 177 227 IPR011598 GO:0046983
Apr3g0854 291 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
Apr3g0854 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 221 IPR011598 GO:0046983
Apr3g0854 291 MobiDBLite consensus disorder prediction 122 138 - -
Apr3g0854 291 Gene3D - 168 245 IPR036638 GO:0046983
Apr3g0854 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 238 IPR036638 GO:0046983
Apr3g0854 291 PANTHER BNAC05G07950D PROTEIN 1 291 - -
Apr3g0854 291 MobiDBLite consensus disorder prediction 36 161 - -
Apr3g0854 291 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 291 IPR024097 GO:0006355
Apr3g0854 291 CDD bHLH_AtBPE_like 161 246 - -
Apr3g0854 291 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0854 Apr-Chr3 22400335 22403409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0854 1 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 51.987 2.55e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0854 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0854 - - gmx:100784478 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0854 3 22400335 22403409 Apr3g0854 3 22400335 22403409 ECH