Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0848 ATGTGTTCTGCAGAGAAGGATCAGGGGATCATGTTATTCGGCGTGCTGCTCACCGTACCCGATAATAACAACAACTCTTTCAGGAAAAGCGCCAGTATGAACAACCTCTCTCAATATGAACCCTCACCGCCCCACGATCCCAACGCAGGCTACGCCTCAGACGACGTTGTTCACCCCTCCCGTCACACCCGCGAGCGCAAGCGAGGGGTTCCATGGACGGAAGAGGAGCACAGGCTGTTCCTGTTGGGATTGCAGAATGTTGGCAAAGGAGATTGGAGAGGAATTTCCAGAAACTTCGTGAAGACTCGGACGCCAACTCAGGTGGCTAGTCACGCTCAGAAGTACTTTCTCCGTCGTCACAGTCATAACCGCCGCCGCCGGAGATCTAGTCTCTTTGACATCACTACCGACTCGGTAATGGAAGAAGAACAAGAGATGTCATCAGTTAGGCCGAAACCCTTTTTGCCGGTGCCGCCGTCTTCGAAGATGGCTGAGTTGGACTTGAATGAGAAGGTTTCTGGCTCTGCTCTTACTGAGTCTCTGCCATTGTCGCTGAATCTTCCAACTTCGCCATCGTCCAAGGAGCATTCGCCGCGGACTAGTACCCACTCGCCGTCGTCTTTTCAGCCTATGTCTACTGAGAGTTTAGGCAGTGGCAGTGGCGGGGATAGCATTATCAGTGTTGCTTGA 690 0.5275 MCSAEKDQGIMLFGVLLTVPDNNNNSFRKSASMNNLSQYEPSPPHDPNAGYASDDVVHPSRHTRERKRGVPWTEEEHRLFLLGLQNVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHSHNRRRRRSSLFDITTDSVMEEEQEMSSVRPKPFLPVPPSSKMAELDLNEKVSGSALTESLPLSLNLPTSPSSKEHSPRTSTHSPSSFQPMSTESLGSGSGGDSIISVA* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0848 229 MobiDBLite consensus disorder prediction 173 229 - -
Apr3g0848 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 120 IPR017930 -
Apr3g0848 229 PANTHER TRANSCRIPTION FACTOR KUA1 9 146 - -
Apr3g0848 229 PANTHER TRANSCRIPTION FACTOR KUA1 148 217 - -
Apr3g0848 229 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 67 118 IPR006447 GO:0003677
Apr3g0848 229 CDD SANT 71 116 IPR001005 -
Apr3g0848 229 ProSiteProfiles SANT domain profile. 67 120 IPR017884 -
Apr3g0848 229 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 9 146 - -
Apr3g0848 229 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 148 217 - -
Apr3g0848 229 MobiDBLite consensus disorder prediction 126 161 - -
Apr3g0848 229 MobiDBLite consensus disorder prediction 28 42 - -
Apr3g0848 229 MobiDBLite consensus disorder prediction 28 69 - -
Apr3g0848 229 SMART sant 68 118 IPR001005 -
Apr3g0848 229 Gene3D - 70 121 - -
Apr3g0848 229 ProSiteProfiles Myb-like domain profile. 64 116 IPR001005 -
Apr3g0848 229 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Apr3g0848 229 SUPERFAMILY Homeodomain-like 66 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0848 Apr-Chr3 22243945 22245247 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr3g0848 Myb_DNA-binding 2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0848 - - aprc:113858283 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0848 3 22243945 22245247 Apr3g0848 3 22243945 22245247 ECH