Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0836 ATGGTAATGATTGTTACCCGTTTTGCATTGATGCTGCATCTCCAAAACCCACCAATTCGGTTGCACTTGTTCTCCCACTTCAACAATGCTCGCACCTTGTTTCTCACACCTACCTCGCCTTCTCTATTCAAAACGCGCCCCTTTCCACGCCAAACGCAATCAAGAGCCTTTGTAAGCGCTCTTGCATCATCATCACAAGATTCCAATGGCAGAGACACTTTCTTCGCAGAAGAAACCGTTTCGTGGAGCTCACTCGGTCTCTCTAATGCCATTTCTGGAGCACTCTCTAACGTTGGCCTCAACAGACCCTCTCTCGTTCAGGCCTCTTCTATACCATCTGTGCTGTCAGGGAAGGATGTGATTATTGCAGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTAATTGATAAGCTACGTGAGAGCCATGATCATTCTCTATACGCTGTGTCTGATCAAGAAGTATCTCCACCACAGAAAGTTCTGCTTGTTCTTTGTCCAAATGTGCAACTGTGTGAGCAGGTAGTTAGGATGGCTAGCAGTCTCTGTAAAGACAATGGTGAGACGATAGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGGGAACCTGATATCATTGTGACAACTCCCGCTGCCCTTCTGAATTATGTTGACCTTGAAAGAACCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAATTTGCTCCGCTTTGATGAAAAATTTTTGTCTCGTTCAAAGGAATCAGTTGAAGAGTTGCCAATGAAACAGGGATCTTCCTTGTCATCAGAAGATGCTTTTGAAGGTGAAGAGGAACTTCAAACTGAAGCCACCTCAGACGAGGATGACAATACTTATGAGGATATTGTTGATAATACTAACGAAGCTGTATCTGCTAAACAAAGAGACTGGAGGAGAGTGAGGAAAAATTATAAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGGGACATTGAAACATATGTTTCCTGATGCTAAGTGGGTTTGTGGAAACTATCTCCATTGTCACAATCCAAGATTGGAGCAAAAATGGATAGAAGTTACAGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCTGAAGATTTGGATAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAATACTGTCGAGGCCGTTGAAGCTGTGGCAAAGATATTGCTCCGATCTGGGATTGAATGTTTACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAGACCTTAGTTGATTTTCATGAGAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGCGGTGTTGATATTCCAAACGTCTTGCATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTCTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACTGAATCCAACAGGGAGCTTGTTGATGCAGTTCGTCGGGCAGGGGAACTTGGTCAACCTGTGGAAACTGCATTTAGCCGGAAAAGAAGCTTCCGAAACAAGCTCAAGAAGAGGGGTACTAACAAAGTCAGGGATTCAGCGACTATTAAAAAGAGTTTTGTAGCATGA 1743 0.4378 MVMIVTRFALMLHLQNPPIRLHLFSHFNNARTLFLTPTSPSLFKTRPFPRQTQSRAFVSALASSSQDSNGRDTFFAEETVSWSSLGLSNAISGALSNVGLNRPSLVQASSIPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRESHDHSLYAVSDQEVSPPQKVLLVLCPNVQLCEQVVRMASSLCKDNGETIVSVAAICGRQGWPIREPDIIVTTPAALLNYVDLERTRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKFLSRSKESVEELPMKQGSSLSSEDAFEGEEELQTEATSDEDDNTYEDIVDNTNEAVSAKQRDWRRVRKNYKRSKQYIFVAATLPVNGKKTAGGTLKHMFPDAKWVCGNYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHSFRSEDLDNAGGIHRTMVFANTVEAVEAVAKILLRSGIECLRYHKNCTLEERAQTLVDFHEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRRAGELGQPVETAFSRKRSFRNKLKKRGTNKVRDSATIKKSFVA* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0836 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 371 IPR014001 -
Apr3g0836 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 528 IPR027417 -
Apr3g0836 580 MobiDBLite consensus disorder prediction 282 315 - -
Apr3g0836 580 CDD DEADc 94 268 - -
Apr3g0836 580 MobiDBLite consensus disorder prediction 294 315 - -
Apr3g0836 580 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 50 555 - -
Apr3g0836 580 Gene3D - 50 369 IPR027417 -
Apr3g0836 580 CDD SF2_C_DEAD 387 525 - -
Apr3g0836 580 SMART ultradead3 99 390 IPR014001 -
Apr3g0836 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Apr3g0836 580 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 50 555 - -
Apr3g0836 580 Pfam DEAD/DEAH box helicase 106 268 IPR011545 GO:0003676|GO:0005524
Apr3g0836 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 564 IPR001650 -
Apr3g0836 580 SMART helicmild6 436 516 IPR001650 -
Apr3g0836 580 Pfam Helicase conserved C-terminal domain 423 516 IPR001650 -
Apr3g0836 580 Gene3D - 388 580 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0836 Apr-Chr3 21799047 21805399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0836 330 542 Eukaryotic Initiation Factors Gene Family AT5G11200 25.820 4.52e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0836 - - gmx:100789323 972.23