Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0815 ATGAATCGGGTTCACTCTCAAATTTGCCATAGCAGTGATGCTATCGCCAACCCCACTATTATTTCCTCATCTTCTTCTTGTTCTTCTTTTTCTGAATCATTACCTTACAGTTCTGATTACAAGAAATTATTAGCCCCTCCTTTAGCTTCTTCATCTGGCAATAGAATAAGCCCTGCAGTTGTTTTCATCATGGTCATTTTAGCTATTGTGTTCTTCATCTGTGGTCTTCTTCACTTCGTTGTTAGATTCCTCATAAAGCACAGGTCCTCTTCATCAATTTCTCAATCCAATAGGTACCCTGACATGTCTGAATCTGATCCTTATCAAAGACAGTTACAACAACTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATTGATGCTCTCCCAGTTTTCCTTTACAAGGACATAATAGGTTTGAAAGAGCCATTTGATTGTGCTGTGTGTCTTTGCCAGTTCTCAGAACAAGACATGCTGAGGTTATTGCCCCTTTGCAATCATGCTTTTCACATTGATTGCATAGACACATGGTTGCTGTCAAATTCAACTTGTCCTCTTTGTAGAGGGAGTCTTTATGAGCCAGGCTTTGCCTTCGAAAACCCAGTTTTTGAATTTGAGGGTCTAAGGGAAGAAGATGTGGTTTCAGGCAGTGTTGTTGGTGAGACTGCTTTCATTAACAAACATGCAGAAAATCACATAATGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGCAAGTTTAGAAGCTCAAATAATGGAGAGGAAATGGAAAGAAGTGGTGGAGAGAGCAGTACTAGTAACATGGATGTTAGGAGATGCTATTCAATGGGGTCATTCCAGTATGTGGTAGCTGATTCAGATTTGCAAGTGGCTTTGTGTGCCAATAGAGGTGCTAGTGGCAGTATGAGAAAATTGACAGGAAGATTAGCCCATTATGGGAATTCTTCCACTGATGGAGATGTTGAGGGGAAAAAAATCAACATTGCGAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCTATGGTCTAGGAAGGACAAGGTGTCAGGTTCACCAGGAAACCATTTGGTTAATCCTAATGTCACTGCAACTTTGCCATGGATGAATAGAGATCAAGGTACATGA 1134 0.4092 MNRVHSQICHSSDAIANPTIISSSSSCSSFSESLPYSSDYKKLLAPPLASSSGNRISPAVVFIMVILAIVFFICGLLHFVVRFLIKHRSSSSISQSNRYPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPVFEFEGLREEDVVSGSVVGETAFINKHAENHIMNGKRVFSVRLGKFRSSNNGEEMERSGGESSTSNMDVRRCYSMGSFQYVVADSDLQVALCANRGASGSMRKLTGRLAHYGNSSTDGDVEGKKINIARKGESFSVSKIWLWSRKDKVSGSPGNHLVNPNVTATLPWMNRDQGT* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0815 377 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Apr3g0815 377 SMART ring_2 148 189 IPR001841 -
Apr3g0815 377 SUPERFAMILY RING/U-box 127 196 - -
Apr3g0815 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 369 - -
Apr3g0815 377 Pfam Ring finger domain 147 190 IPR001841 -
Apr3g0815 377 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Apr3g0815 377 CDD RING-H2_PA-TM-RING 147 190 - -
Apr3g0815 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 195 IPR013083 -
Apr3g0815 377 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0815 Apr-Chr3 21389752 21392218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0815 75 354 C3H Transcription Factor Family AT2G18650 37.864 9.89e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0815 - - gmx:100818135 568.926