Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0808 ATGTCTCGCGTTTACGTTGGAAATTTAGACCCTCGAGTCACTGAGAGGGATCTCGAAGATGAATTTCGTTTTTACGGTGTTCTTCGGAGCGTCTGGGTTGCTCGTAGACCCCCAGGATATGCATTTATTGAGTTTGATGATCGGAGGGATGCACTTGATGCAATTCATGCATTGGATGGAAAAAATGGCTGGCGCGTAGAGCTTTCTCATAATTCTAAGGGTGGTGGTGGCCGAGGTGGGCGTGGCCGTGGAGGTGAGGACTTAAAATGCTATGAATGTGGTGAGCCTGGACACTTTGCTCGAGAGTGTCGTTTGCGTATTGGTTCACGTGGCTTGGGAAGTGGAAGGAGGCGAAGTCCAAGCCCTTATCGGCGTCGTAGAAGTCCAAGTTATGGGAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGATGTAGCATATCACCTCTGCACCGTGGACGAAGCTACAGCAGGTCCCCCCCATACCGTCATTCTCGTCGTGATTCACCTTATTCAAATGGAGATTAA 528 0.4981 MSRVYVGNLDPRVTERDLEDEFRFYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGRGGRGRGGEDLKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGSYSPRGRRSPRRCSISPLHRGRSYSRSPPYRHSRRDSPYSNGD* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0808 175 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Apr3g0808 175 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Apr3g0808 175 MobiDBLite consensus disorder prediction 161 175 - -
Apr3g0808 175 SUPERFAMILY Retrovirus zinc finger-like domains 79 106 IPR036875 GO:0003676|GO:0008270
Apr3g0808 175 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21 2 173 - -
Apr3g0808 175 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 173 - -
Apr3g0808 175 MobiDBLite consensus disorder prediction 110 175 - -
Apr3g0808 175 SMART rrm1_1 3 69 IPR000504 GO:0003723
Apr3g0808 175 Gene3D - 77 145 - -
Apr3g0808 175 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Apr3g0808 175 CDD RRM_SRSF3_like 3 71 - -
Apr3g0808 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Apr3g0808 175 Gene3D - 2 69 IPR012677 -
Apr3g0808 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Apr3g0808 175 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0808 Apr-Chr3 21188371 21194283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0808 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 43.548 6.56e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0808 K12896 - tcc:18609404 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0808 3 21188371 21194283 Apr3g0808 3 21188371 21194283 ECH