Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0795 ATGACTGGTTTGGGTGTAGTAGAGTGGCTTAGACCCCTTGTTGAAACCAAGGCTTGGGATTATGTTGTTCTTTGGAAATATGGAGATGATCCAACTAGGTTTTTTGAGTGGGTGGGTTGCTGCTGTAGAGGGAGTTGCAATGGAAACATCGAGGAAGTGAAACCTGAAGAGGAAATGGGTAAACTATACCACTTGGCTCCCATTTGTAGAGACACCTTTCAGCATTCAGTTAGAACAAAGGCTTGTGAGGCTCTTGCCCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGGTCTCTCTCTTACTCTCATTCTGATTCAATTGGAACCCAAGTTTTAATCCCTATTGTTGGTGGTCTTATAGAGCTCTTCACTGCAAAACTGATTCCAATGGATATGAATACCATTGAGTTCATAACAGCACACGCTTGTGCCACTGTAAAGCAAGAAGCCAAATCTGCTCAGAGCTACACCAATCTGAACATCAAAGAACAGCTTCCATTAAGCGAACAATACTCACAATGCTGGCCACAGCACATGCCAAATTTAACTCCTAGTATCCACCTGCCTGCAACAAAACAGTGCAGCTCCCATCTTAGCATTGAAGGACCCTCCAGTGGGTCTAATCCTTCAACTGAAGAACCATCATTTGATTCAACGTTTGCTCGCACGATTCCACATGAATATCTGAAGCAACCAGTTAAAATATCTCCTATTTGCAAAAATAAAAGGCCCAAGTACAATGAAACTTCTGGGAAAAAGCAGAGAGGTTTGAGTTCCCATTGTGGCACTGGGGAAAAGGATAAATCAAAATTGGTCAAGGAGCCTCAAAAGGATGGTTTCCGTGCTAAAAATCTTGTCACAGAGAGGAATAGGAGAAACAAGATAAAAAAAGGGCTTTTTACTCTGCGGTCTCTAGTCCCTAACATAACCAAGATGGATAGAGAAGCAATTCTTGCAGATGCAATTGACTACATAAAGGAATTGCAGATACAAGTAAAGAAGCTCAATGATGAGGTCAGGGATTTGGAAGTACAGGACTGCGAGAAGAACACACAATTTAACATAAAAGCAGGCAAAAAACAAGGAGGAACCAGAACTAACCCTCTTAATCAAAGTTCTTCAGATTGTGTTAAAAAGACACAGATGGAGGCCCAAGCAGAAGTGCATCACATAAGCAAGACAAGTTTCTTGATTAAGTTACACGGTGAACAGAAGCAGGGTGGGTTTTCAAAGTTGATGGAAGCTATACATTCATTTGGACTGCAGGTGGCTAATGTCAATATGACCACGTTTGATGGCAAAGTCCTGAGCATTTTGACGGTTGAGGACTCCAGAACTAAACACTCTTCAAATTCCATTTTGGTTTGGTAA 1371 0.4172 MTGLGVVEWLRPLVETKAWDYVVLWKYGDDPTRFFEWVGCCCRGSCNGNIEEVKPEEEMGKLYHLAPICRDTFQHSVRTKACEALAQLPFALSLYSGSLSYSHSDSIGTQVLIPIVGGLIELFTAKLIPMDMNTIEFITAHACATVKQEAKSAQSYTNLNIKEQLPLSEQYSQCWPQHMPNLTPSIHLPATKQCSSHLSIEGPSSGSNPSTEEPSFDSTFARTIPHEYLKQPVKISPICKNKRPKYNETSGKKQRGLSSHCGTGEKDKSKLVKEPQKDGFRAKNLVTERNRRNKIKKGLFTLRSLVPNITKMDREAILADAIDYIKELQIQVKKLNDEVRDLEVQDCEKNTQFNIKAGKKQGGTRTNPLNQSSSDCVKKTQMEAQAEVHHISKTSFLIKLHGEQKQGGFSKLMEAIHSFGLQVANVNMTTFDGKVLSILTVEDSRTKHSSNSILVW* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0795 456 SMART finulus 285 334 IPR011598 GO:0046983
Apr3g0795 456 Coils Coil 318 345 - -
Apr3g0795 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983
Apr3g0795 456 MobiDBLite consensus disorder prediction 240 281 - -
Apr3g0795 456 Gene3D - 272 346 IPR036638 GO:0046983
Apr3g0795 456 MobiDBLite consensus disorder prediction 259 281 - -
Apr3g0795 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 345 IPR036638 GO:0046983
Apr3g0795 456 MobiDBLite consensus disorder prediction 193 217 - -
Apr3g0795 456 Pfam Helix-loop-helix DNA-binding domain 282 329 IPR011598 GO:0046983
Apr3g0795 456 PANTHER TRANSCRIPTION FACTOR BHLH90 63 445 - -
Apr3g0795 456 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 63 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0795 Apr-Chr3 20823723 20826528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0795 6 454 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 27.341 6.92e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0795 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0795 - - gmx:100807261 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0795 3 20823723 20826528 Apr3g0795 3 20823723 20826528 ECH