Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0738 ATGAAACTGCTATGTGGGAACCTCAACGAAGAAGAGTGTGAGAGAGAGTTCCTACTTGCTCGTTTGTTTTCTCTCCAAGGCTCGCTTCTTATGCTCGATTGCCCAATACCCCTACGATCTCATCCTCCAACCCAAGATTCTCATCTTCAGAAAATGGAATTCGAGGACCAAGAGGAACCAGAGTTGGGGATTCACGGACCGAGTTACGATGACTCGCCGTTGAACGCGTGCCGGGTTAAAATGCCGAGTCACATAGAAGAAGAACCTCCGGTGCTCAGTCACCCCGCCATCAGAAACACCGGCAGGGGAAGGTACAAGGAGTGCCTCAAAAACCACGCGGTGGGAATTGGAGGCCACGCGCTCGACGGTTGCTGCGAGTTCATGGCGGCGGGAGCAGAGGGCACACTCGACGCGCTCAAGTGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACTGATGCCGTGGCCGAAGATCACTTCGCGTCGCCGTTCCACCCCCGCCGCCACCAGCCGCCGCAGTTCGCGGCGTACTATCGGGCGCCGGCGGGGTACTTACACGTGGCGGGGCAGCAGAGAGTGGGTGCCACGCTGGCACTCCCGTCCACGTCAGGTGGTGGCGGTGGGACCCAAAGCCCCAGAGAGGACCAAGAAGATGCTTCGGACCCAAGTGGTGGCGGGTCCAAGAAGAGGTTCAGGACCAAGTTCACGCGCGAACAGAAGGACAAGATGCTCGAGTTCGCTGAGAAATTGGGTTGGAGGATTCAGAAGCACGACGAGAGCGTCGTTCAGGAGTTCTGCTCCCAAACTGGTGTCAAACGCCGCGTTCTTAAGGTTTGGATGCATAACAACAAACACACCCTTGGTAAGAAGCCCTAG 885 0.5751 MKLLCGNLNEEECEREFLLARLFSLQGSLLMLDCPIPLRSHPPTQDSHLQKMEFEDQEEPELGIHGPSYDDSPLNACRVKMPSHIEEEPPVLSHPAIRNTGRGRYKECLKNHAVGIGGHALDGCCEFMAAGAEGTLDALKCAACNCHRNFHRKETDAVAEDHFASPFHPRRHQPPQFAAYYRAPAGYLHVAGQQRVGATLALPSTSGGGGGTQSPREDQEDASDPSGGGSKKRFRTKFTREQKDKMLEFAEKLGWRIQKHDESVVQEFCSQTGVKRRVLKVWMHNNKHTLGKKP* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0738 294 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 105 154 IPR006456 -
Apr3g0738 294 MobiDBLite consensus disorder prediction 200 235 - -
Apr3g0738 294 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 231 287 IPR006455 -
Apr3g0738 294 Pfam ZF-HD protein dimerisation region 104 155 IPR006456 -
Apr3g0738 294 Gene3D - 216 291 - -
Apr3g0738 294 MobiDBLite consensus disorder prediction 217 235 - -
Apr3g0738 294 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 104 154 IPR006456 -
Apr3g0738 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 94 293 - -
Apr3g0738 294 SUPERFAMILY Homeodomain-like 223 292 IPR009057 -
Apr3g0738 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 94 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0738 Apr-Chr3 19307671 19308555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0738 104 290 ZF-HD Transcription Factor Family AT4G24660 57.672 3.02e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr3g0738 ZF-HD_dimer 4.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0738 - - gmx:100808910 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1685 7 24069231 24071265 Apr3g0738 3 19307671 19308555 PCT