Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0732 ATGGGGAAGAAGAAGATTCAGATTAACAAGATCGATGATGCTACCACGAGACAAGTGACGTTTGCGAAGCGGCGAAAAGGACTCTTCAAAAAAGCTGAGGAGCTTTCGGTTCTTTGCGATGCAGACGTTGCTCTCATTGTCTTCAATTCTTATGGGAGGCTTTTCCATTACTCCAACTTGAGGATGAAGGAAGTACTAGAAAGGCATCATTTGTACTCCAAGAACTGGGCAAAGTTGGAACAACCGTCTCCTGAGTTGGAGCTTATTAGCAACAATAACGCTAGATTAAGCGAAGTTTATGAGAAGAGTCTTCAGCTCAGACAACTAAAAGGAGAGGACCTTGAAGGTTTAGATATTGAAGAGTTACAACAACTGGAGAGATCTTTCGAAACACGGTTGCGCCACGTAATTGAAAAAAAGGAAGAGAAGATTATAAATGACATGAGGATTCTCCGAGGAAAGGAAAAGCAATTGATGGAGGCGAACGAGCGACTACTGAATCACGGAATTGTGACAGACATATCCACTGGCAAAAGACACAGTAGTGAGAACAATGGCAATTCAGACCCGTGGCTCAAATTGGGGCTACCATACTCCAGCTGA 603 0.4328 MGKKKIQINKIDDATTRQVTFAKRRKGLFKKAEELSVLCDADVALIVFNSYGRLFHYSNLRMKEVLERHHLYSKNWAKLEQPSPELELISNNNARLSEVYEKSLQLRQLKGEDLEGLDIEELQQLERSFETRLRHVIEKKEEKIINDMRILRGKEKQLMEANERLLNHGIVTDISTGKRHSSENNGNSDPWLKLGLPYSS* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0732 200 MobiDBLite consensus disorder prediction 175 200 - -
Apr3g0732 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 - -
Apr3g0732 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr3g0732 200 Pfam K-box region 89 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g0732 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr3g0732 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr3g0732 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr3g0732 200 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g0732 200 MobiDBLite consensus disorder prediction 175 189 - -
Apr3g0732 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr3g0732 200 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Apr3g0732 200 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 185 - -
Apr3g0732 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr3g0732 200 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Apr3g0732 200 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0732 Apr-Chr3 19109447 19119537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0732 1 198 MADS-box Gene Family AT2G22540 50.000 2.10e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr3g0732 K-box 5.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0732 - - aprc:113859574 380.948