Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0724 ATGGCCGGTAGAGGTAGAAGAGCTGGAATCACCAATGACCTCCTAAAGCGAATGACCCAAGTTCTAGAGGCCTTGGTGCATAACCAAGATGGAGAGCCAGCTAAGTATAGAGGGTTGTCTGCCTTCACTAGGCACAACTCTCCAAAGTTTGAAAGGAAGTTTGACCTTGAAGAAGCCCAGAGATTGGTAGCAGATATGGAGAAAATCTTCCATGCAATGGGGTGTAGGGAAAAGAACAAGGTGACCTACACCACCTACATGATATATGGGGAGGCAGAAGACTGGAAATCGAAAGTTGACATTAACGGAATGTTCTACGTTCATCAGCACAAACCTGCATTCTGTGAGTTGTTCATTATTTGTGAAGGGAAACATGTTTCACCTCGTATGAAGAATGATGAGATAATGATGGAGGATGTTGATGGGGTCAAGGTTGCCAAAATGAGAGAGAAGATAAATTTTAAGGATTGGTTAGAGAGAATGTTCATTGATAAAACCGTTGATTCCCAACATACAGGTTCTAGTGAATCATTTACTTTCTCTACAAATTTGGAGCCCCATCTTAACCAAAACCAATGGGAATTTTCTTTCCAAGAAGTTGAAAATTATTTACAAGAATTAATGTCTTTAAATTCAGAAGAAGGAAGTTATGTCCAAGACAACGAGGTCTCCCCCATGATTAGTCCAATAGAGCCATATGCCAAAGAATGTAACAATTCTAATAATAAGAGTGCAGCAGAAAATATTGAGATCCTCAGAGAGAAACTGAATGAAGCTTACAAAACCATCCAAATGAAGAGGAAAGAAGACGTGACAAATATGGAGAGACATGAAAAGGCTGAATGGGCTATTTATTTATGTAACCGTCGGGAAGAACTGGAATCTCTAAGAAAGGAAGAAGTGACAAGAAGGGAAGAACTAGAGAAGGAACTGGATGCAGAAAAAGAACAACTTGATGAAATTAGAATGGATGTTGAAGAGAGCAAAAAACAGCTTAGTGCAGTGGTTGAGGAGCAATCAGTGCTCCAAAACAGGCTTCATAATTGCACACTGGCAGTGTCAGAAGCTGAAACCATAGTAGGGAAAATATTGGCTGAAAGGACAGAGATGCTTATGGAGATAAATGATCTAAGGAGACAAAGGGATGTGCTGAATAGAAGGATTAAGTTTTTCAAAGAAAAAGATGCCACAAGAATGAGTGTTAGGCTAACGGAGAAGAGTTGTAATTTCAGAGAGTACACCAAGGAAGAGATGACCTTGGCCACCCATAATTTTTCAGAGCATTTGAGGTTGAAACCTTGTGGGAATTCGACCAATGTCTATAGAGCACAAATGAACCATTCCACTGTTGCAATCAAGATACTCAATTCTGATTCTGCCCTGTCCCAACCAGATTTCCAAGCCAAGGTGAGGTCCCTTGGTAGTATTCGGCAACCTCATCTGGTTGCCACTGTGGGCTTCTGCTCTGAGCCCAAATGCATAGTTTTAGAATACATGCAAAATGGAAGCTTGGAAGAAATGTTATTTTGTAAAAGAGGCCGGGCCTTAAGCTGGCGTGATTGCATAAGGATAGCCATAGAAGTGTGTTCTGGGCTCCTCTTTCTAAATTCAGCTCAGTCTAGGCCCATTATTCATTGTCATCCTTCCCCTTCCAAAATTCTCCTAGACTGCAATCATGTTGCAAAGATCACAGGGTTTGGGCTTTATGGGTGCAGTGATGAATGCAAAGTCAAGTCAGATATGGAGGCAATAGGAGTTGTGTTGCAAAATCTATTGACTGGAAGAAGAAATTTGGTAGCAATGGATACAAAGGTTTTTTATGATGAGATTGGTGAACATTGGCCATTGGATGTAGCTAGAGAAATGGTGGGCTTAACAATGAGGTGCATGTTCATGAACTGTGGGCCCAATGGAGAAATGAGCATTGCAAGAGTCAAGGAGGAACTCAATCTGATCAGAAGAAAGGGTGATGACATGGTTGCTAAGGTAGGAGGGAGGGTTATCATTCATGGGAATCTAAATGGACAATACTCCAGTGATGTGCCTAGTATTTTTATTTGCCCTATCCTTCAGAAGATAATGAAAAATCCACATGTGGCAGCAGATGGGTTTTCTTATGAGCTAGAAGCAATGGAAGAGTGGTTGCGATCAGGGCATGACATATCACCCAAAAAGCTAAGGCTGAAGCACAGATTACTTACCCCTAATCATACCCTTCGTTCCCTAATTGAGGACTGGCAAAGCATGAGATCAACTAAAGTTTCAATGTAA 2271 0.4117 MAGRGRRAGITNDLLKRMTQVLEALVHNQDGEPAKYRGLSAFTRHNSPKFERKFDLEEAQRLVADMEKIFHAMGCREKNKVTYTTYMIYGEAEDWKSKVDINGMFYVHQHKPAFCELFIICEGKHVSPRMKNDEIMMEDVDGVKVAKMREKINFKDWLERMFIDKTVDSQHTGSSESFTFSTNLEPHLNQNQWEFSFQEVENYLQELMSLNSEEGSYVQDNEVSPMISPIEPYAKECNNSNNKSAAENIEILREKLNEAYKTIQMKRKEDVTNMERHEKAEWAIYLCNRREELESLRKEEVTRREELEKELDAEKEQLDEIRMDVEESKKQLSAVVEEQSVLQNRLHNCTLAVSEAETIVGKILAERTEMLMEINDLRRQRDVLNRRIKFFKEKDATRMSVRLTEKSCNFREYTKEEMTLATHNFSEHLRLKPCGNSTNVYRAQMNHSTVAIKILNSDSALSQPDFQAKVRSLGSIRQPHLVATVGFCSEPKCIVLEYMQNGSLEEMLFCKRGRALSWRDCIRIAIEVCSGLLFLNSAQSRPIIHCHPSPSKILLDCNHVAKITGFGLYGCSDECKVKSDMEAIGVVLQNLLTGRRNLVAMDTKVFYDEIGEHWPLDVAREMVGLTMRCMFMNCGPNGEMSIARVKEELNLIRRKGDDMVAKVGGRVIIHGNLNGQYSSDVPSIFICPILQKIMKNPHVAADGFSYELEAMEEWLRSGHDISPKKLRLKHRLLTPNHTLRSLIEDWQSMRSTKVSM* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0724 756 SUPERFAMILY RING/U-box 676 748 - -
Apr3g0724 756 SUPERFAMILY Protein kinase-like (PK-like) 408 633 IPR011009 -
Apr3g0724 756 SMART Ubox_2 684 746 IPR003613 GO:0004842|GO:0016567
Apr3g0724 756 ProSiteProfiles Protein kinase domain profile. 426 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0724 756 Gene3D Transferase(Phosphotransferase) domain 1 499 574 - -
Apr3g0724 756 Gene3D Phosphorylase Kinase; domain 1 409 498 - -
Apr3g0724 756 Coils Coil 242 269 - -
Apr3g0724 756 CDD RING-Ubox_WDSUB1_like 685 723 - -
Apr3g0724 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 755 IPR013083 -
Apr3g0724 756 Coils Coil 290 338 - -
Apr3g0724 756 PANTHER U-BOX KINASE FAMILY PROTEIN 95 751 - -
Apr3g0724 756 ProSiteProfiles U-box domain profile. 680 753 IPR003613 GO:0004842|GO:0016567
Apr3g0724 756 Coils Coil 367 394 - -
Apr3g0724 756 Pfam Protein tyrosine and serine/threonine kinase 435 570 IPR001245 GO:0004672|GO:0006468
Apr3g0724 756 PANTHER OS02G0152300 PROTEIN 95 751 - -
Apr3g0724 756 Pfam U-box domain 681 749 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0724 Apr-Chr3 18979264 18990433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0724 101 755 U-box Gene Family AT5G65500 42.921 2.65e-168 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Apr3g0724 PK_Tyr_Ser-Thr 7.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0724 - - gmx:100795815 937.176