Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0723 ATGGCTGGAGCCACAAACTGGCTTACGTTTTCGTTGACTCCCATGGAAATGCTGAGATCCTCAGACTCACAGTTTGTTCCATACGATACTCCCTCTCACTGCTTCGTCGATAACTTCTATGCCAACAATGGGTGGACAAATTCTAAGTCTGAAATGGTGAACCAAAACCAGGCACAGAGTTTATCTGATCCAACGACTCTCCCTAGCTTGATGGCTTCACAGAATGAAAACCAATCACTTGCTGTGCCGAAAATTGAAGATTTTTTCGATAACCAAACAGATACTCAAGATTCTTCGCTGACCCAAATTTACGATCATGGCACTGCCTCCGCTGCTTACTTCAGTGACCAGCAAGATCTGAAGGCGATTGCTGGATTTCAAGCTCTCTCTGCCACCAACTCGGGCTCCGAGTTGGATGACTCAGCCTCTAACAAGACTCGGGGTGCACCCGGCGAGTTAGGTGCAAACTCGGTTGAATCTTCCAAGGGAGCTTTGTCAGCACGCGACGGTTCTAAAGATAAAGCCATCGTTGGGGTGGAATTTGATAACCCGAAGAAGGTTGCTCATACCTTCGGCCAGCGAACTTCAATATACAGAGGTGTCACGAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGACGGGAGGGTCAGGTCAGGAAAGGGCGTCAAGTGTATTTGGGTGGTTATGACAAGGAAGAGAAGGCCGCAATAGCTTATGATTTGGCAGCTCTTAAGTACTGGGGACCAACAGCTACAACTAACTTTCCCGTTTCCAAATATTCAAAGGAATTGGAGGAGATGAAAAGTACAGGAAAACAAGAATTTATTGCATCGCTGAGAAGGAAAAGTAGCGGTTTTTCGAGGGGAGCTTCGGTATACAGGGGTGTTACAAGGCATCATCAACAGGGTAGATGGCAAGCAAGAATTGGTCGAGTTGCGGGAAACAAAGATCTATACTTGGGAACATTCGCAACTGAAGAGGAAGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTTAGAGGTGCAAGCGCTGTGACCAATTTTGAGATGAGTAGATATGACGTGGAAGCAATATTGAAGAACTCTCTACCAGTTGGTGGGGCGTCAAAACGCTTGAAACTTTCCCATGAATCAGAGAATAAAGCTCCAATGAGTGGTACTCAACAACCTCAGTGTTCAAAAGTGAGTAGCAGCATCAATTTCTCAACCATTCAGCCAGTTGCTTCTATTCCCTATGATTCTGCGACTACATATTACCCCCACAACCTCTTCCCCCATTTTTATCCTACCAACAGTGGAATTAGCACAGTAGAGTCTGCAGCAACTATGACCAACGCCACCACACTGACTACTCTTCCAGCACCGCCTGAGTTCTTTATATGGCCTCATCAGCCTTATTGA 1425 0.4618 MAGATNWLTFSLTPMEMLRSSDSQFVPYDTPSHCFVDNFYANNGWTNSKSEMVNQNQAQSLSDPTTLPSLMASQNENQSLAVPKIEDFFDNQTDTQDSSLTQIYDHGTASAAYFSDQQDLKAIAGFQALSATNSGSELDDSASNKTRGAPGELGANSVESSKGALSARDGSKDKAIVGVEFDNPKKVAHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQVRKGRQVYLGGYDKEEKAAIAYDLAALKYWGPTATTNFPVSKYSKELEEMKSTGKQEFIASLRRKSSGFSRGASVYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGASAVTNFEMSRYDVEAILKNSLPVGGASKRLKLSHESENKAPMSGTQQPQCSKVSSSINFSTIQPVASIPYDSATTYYPHNLFPHFYPTNSGISTVESAATMTNATTLTTLPAPPEFFIWPHQPY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0723 474 MobiDBLite consensus disorder prediction 133 169 - -
Apr3g0723 474 CDD AP2 196 265 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 SMART rav1_2 197 269 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 SMART rav1_2 299 363 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 Pfam AP2 domain 298 349 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 Pfam AP2 domain 197 255 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 Gene3D AP2/ERF domain 197 265 IPR036955 GO:0003700|GO:0006355
Apr3g0723 474 Gene3D AP2/ERF domain 299 359 IPR036955 GO:0003700|GO:0006355
Apr3g0723 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 471 - -
Apr3g0723 474 PRINTS Ethylene responsive element binding protein signature 198 209 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 PRINTS Ethylene responsive element binding protein signature 339 359 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 SUPERFAMILY DNA-binding domain 196 265 IPR016177 GO:0003677
Apr3g0723 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 471 - -
Apr3g0723 474 CDD AP2 298 359 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 MobiDBLite consensus disorder prediction 381 400 - -
Apr3g0723 474 ProSiteProfiles AP2/ERF domain profile. 299 357 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 ProSiteProfiles AP2/ERF domain profile. 197 263 IPR001471 GO:0003700|GO:0006355
Apr3g0723 474 SUPERFAMILY DNA-binding domain 298 359 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0723 Apr-Chr3 18926841 18930926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0723 45 474 AP2-EREBP Transcription Factor Family AT5G10510 51.024 1.32e-144 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Apr3g0723 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0723 K09285 - gmx:100777168 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1703 7 24285389 24289642 Apr3g0723 3 18926841 18930926 PCT