Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0693 ATGGTCGGGCCAAACATCATAGACGACTTCTTTGACCACATCGACGACCTCCTCGAATTCCCCACCGAAGACCCCGTCACCACCGCCGACGCCTCCACCTCCTCCGCCGCGCCGGTCCCTCCTCCGGCGAACTTCTGGTCCAGCGACTCCGACTCGGTTTTTCCCGTCAACACCGTGCCGGACCTCTCGGCGGAGCTCGCCGTTCCGTATGAAGACATTGTGCAGTTGGAATGGCTGTCCAATTTCGTTGAGGACTCATTCTCAGATGGGAACCTCACGATGAACAGAGTGGAGGCACCGTGCAGCACCAAGGAAGACACAGCCAATGCTCAATTCCAGACATCAAGCCCTGTCTCCGTCCTCGAAAGCAGCAGTTTCTGCTCCGGCGAGAAGGGTGCACCTCGCAGCCCGGAGATTTACATCCCAGTGCCATGCGGACGTGCACGGAGCAAGCGTCCACGCCCTGCAACATTCAACCCTCATCCTGTGATGCACCTCATCTCCCCTGCTTCCTCTGTTGGCGAGAACACGCACCTTAATTCCGCCACTTCTAAGGCCTCTTCGGATTCTGAGAATTTCGCAGAGTCTCATCCTGTGATCAAGATTCCAAAGCAGGCTTCTGCAGAGCATAAGAAGAAAAAGAAAACCGAAGTGTCGTTTCCATCAGGTGGAGACCAGAACCTGCATTCCCAAGCAGTTAGGAAGTGTTTGCACTGTGAGATAACCAAGACGCCGCAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCATGTGGCGTGCGTTACAAGTCAGGCAGGCTATTCCCTGAATACCGTCCTGCGGCGAGTCCAACATTTTGCGCTGCCATGCACTCCAATTCCCATAAGAAGGTCCTTGAAATGAGAACTAAGACCGGCAACAATGCTGCCTTTGCTGCCGATGCCGATGCTGATACACCGGAACTTATTCCAAACGCTAACAGCAGCCTTACCGTGGAATACATTTGA 996 0.5462 MVGPNIIDDFFDHIDDLLEFPTEDPVTTADASTSSAAPVPPPANFWSSDSDSVFPVNTVPDLSAELAVPYEDIVQLEWLSNFVEDSFSDGNLTMNRVEAPCSTKEDTANAQFQTSSPVSVLESSSFCSGEKGAPRSPEIYIPVPCGRARSKRPRPATFNPHPVMHLISPASSVGENTHLNSATSKASSDSENFAESHPVIKIPKQASAEHKKKKKTEVSFPSGGDQNLHSQAVRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAMHSNSHKKVLEMRTKTGNNAAFAADADADTPELIPNANSSLTVEYI* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0693 331 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Apr3g0693 331 PIRSF Txn_fac_GATA_plant 4 324 IPR016679 GO:0003677|GO:0005634|GO:0045893
Apr3g0693 331 MobiDBLite consensus disorder prediction 204 219 - -
Apr3g0693 331 MobiDBLite consensus disorder prediction 173 227 - -
Apr3g0693 331 Gene3D - 230 280 IPR013088 GO:0006355|GO:0008270
Apr3g0693 331 PANTHER GATA TRANSCRIPTION FACTOR 8 7 331 - -
Apr3g0693 331 SMART GATA_3 230 280 IPR000679 GO:0006355|GO:0043565
Apr3g0693 331 CDD ZnF_GATA 235 282 IPR000679 GO:0006355|GO:0043565
Apr3g0693 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 293 - -
Apr3g0693 331 MobiDBLite consensus disorder prediction 173 194 - -
Apr3g0693 331 Pfam GATA zinc finger 236 269 IPR000679 GO:0006355|GO:0043565
Apr3g0693 331 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Apr3g0693 331 PANTHER GATA TRANSCRIPTION FACTOR 7 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0693 Apr-Chr3 17811953 17815099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0693 14 300 C2C2-Gata Transcription Factor Family AT4G32890 37.500 2.39e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr3g0693 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0693 - - gmx:100783228 459.529