Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0682 ATGGATTCAAATGGGAGCATATGTGCTAACACCTGGACGAGGTCATCATCCTTAACATCACCTGCAAATGGTTTATCCTCAGATCCTCTCTCATTCCCAGGTATTGGTTTGCAGCATAATCAACGCAAATGGGATGATCCCTCAATTTCAGATTATGGGATCAGTGCTGAAGCACCTTACAAAAACTTCAACCAACTCTCTCAAACCCAGTCTCAGCTTCCTTGCAACTCAAACAATGAGACTAAGATCCCTGGTCAAGAAAACTTTCCTCTGAGTGAATCGTCACAAATTGGTAAACTCCAAGATTGGGACCCCAGTGTAATGTTGAACAACCTTTCCTTCCTGGAAGAAAAGATTCATCAGCTTCAGGGTCTAGTGCATTTGATTGTTAATCAAAAAGGGATCGGACAACCTAATGAACTTGTAACTCAGGAACAGCAGCTCATCACAACTGATCTTACATCAATCATTGTTCAATTGATCTCAACTGCAGGTAGTCTTCTCCCTTCTGTTAGGCATACCCTTATAAACACTAGTCCATTGGTTGGACAGCTTGGCCAGCTCCGTGGGACCATCGTACCTTCTAGGTTGGGTCCAAGTAGCAGCTGTATTCAACCACAAAACAATAGTGAAAAAAAAATCTCTGATCAGTCCATGCAGAGTGATCTACCTAATAATTGTGAAATGGAGCAAAACTACAATATCGAAGACCATGAATTGAAAGATGAAGATGCAGATGATGGAGAAAACCTTCCCCCAGGTTCATATGAGATTTTACAATTAGAAAAGGAAGAAATCCTTGCACCTCATACTCATTTCTGTACGATCTGTGGGAAGGGGTTCAAGAGAGATGCGAATCTTCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCAGCAGCACTTGCAAAGCCACACAAAGAATCTGGCTCTCAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATCCTGGCTGCAAGCGAAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATTTTATGTGTCAAAAACCATTACAAAAGAACCCACTGTGACAAGAGTTACACATGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCTGATCTAAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGCGGTACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAGGGCCACACACCAGCCATTCCCTTGGATGACACTAAAGGGATAGCTGAGCCACCCAATCATGACGGCAAAGAAAATAACACTAAGAAAAAAAGTTGCAACCTAAGAGAATTCATTGACGTGACTCTGAGCTTGATGGAGGTTAGAAAACTCGGCCATTGGTGA 1389 0.424 MDSNGSICANTWTRSSSLTSPANGLSSDPLSFPGIGLQHNQRKWDDPSISDYGISAEAPYKNFNQLSQTQSQLPCNSNNETKIPGQENFPLSESSQIGKLQDWDPSVMLNNLSFLEEKIHQLQGLVHLIVNQKGIGQPNELVTQEQQLITTDLTSIIVQLISTAGSLLPSVRHTLINTSPLVGQLGQLRGTIVPSRLGPSSSCIQPQNNSEKKISDQSMQSDLPNNCEMEQNYNIEDHELKDEDADDGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSQPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGIAEPPNHDGKENNTKKKSCNLREFIDVTLSLMEVRKLGHW* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0682 462 SUPERFAMILY beta-beta-alpha zinc fingers 270 297 IPR036236 -
Apr3g0682 462 SMART c2h2final6 272 294 IPR013087 -
Apr3g0682 462 SMART c2h2final6 321 354 IPR013087 -
Apr3g0682 462 SMART c2h2final6 359 381 IPR013087 -
Apr3g0682 462 ProSitePatterns Zinc finger C2H2 type domain signature. 274 294 IPR013087 -
Apr3g0682 462 Pfam Zinc-finger of C2H2 type 273 294 - -
Apr3g0682 462 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 439 - -
Apr3g0682 462 MobiDBLite consensus disorder prediction 197 225 - -
Apr3g0682 462 MobiDBLite consensus disorder prediction 1 27 - -
Apr3g0682 462 Gene3D Classic Zinc Finger 256 325 - -
Apr3g0682 462 MobiDBLite consensus disorder prediction 1 38 - -
Apr3g0682 462 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 439 IPR044300 GO:0010044|GO:0010447
Apr3g0682 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 272 299 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0682 Apr-Chr3 17598495 17602418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0682 240 431 C2H2 Transcription Factor Family AT1G34370 85.641 5.67e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g0682 zf-met 0.0017 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0682 - - gmx:100500526 771.541