Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0677 ATGGCTTTAGAAACTCTTTCTTCCAATGAGTTTTCCAACTTCATTATCTATGACACTATCTCTGCAACTCCATTTAGCAGCCACGACTCTTCTGAGGCTAGTTTCTTAGAAAATTTAGTGAACTATCAGGAACAAGAACCTGCATTTGATAACTGTGCAATGAGAACCCGAAAGCGCCAAAACAGCGAGCTAGAAACCATTGGAAGGAAGCAGAATGTGGTGGTGCAAGGTAGGAAGAAGAGGAGAAGGAAGCCAAGGGTATGCAAAAACAAGGAAGAGGCTGAGACACAAAGAATCACACACATCACAGTCGAAAGAAACCGCAGAAAGCAGATGAATGAGCATCTTGCTGTCCTTCGTTCACTCATGCCCGAGTCTTACGTCCAAAGGGGTGACCAGGCTTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCTTGCAATCACTTGAAGCTAGAAAGCTGCAACTTTTGCAGCAAGAAGTGGCACAAACCAATGAAGATACGGCCATTTCCAAACTTATGCAACCCCCTTTTGCACAATTTTTTGTGTATCCTCAGTACACATGGTCCCAGGCTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTCACTTTAATAGAGACCCATGCAAATCTTCGAATCCTCACAAGGAGAAGTCCCGGCCAGCTAACGAAGTTGGTATCTGGTTTTCAAACACTCTACCTCACCATCTTACATCTTAATGTCACCACCATAGACCCTTTGGTGTTCTATTCCATCAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGTTCTGTAGATGGTATTTCAACGGCAGTTCATCATTTGCTTGGAAGAATTGAGGAAGAAGCTTCCCTTTGCTGTTGA 900 0.4433 MALETLSSNEFSNFIIYDTISATPFSSHDSSEASFLENLVNYQEQEPAFDNCAMRTRKRQNSELETIGRKQNVVVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLQQEVAQTNEDTAISKLMQPPFAQFFVYPQYTWSQAPNKYTSKTKAAIADIEVTLIETHANLRILTRRSPGQLTKLVSGFQTLYLTILHLNVTTIDPLVFYSISAKVEEGFQLGSVDGISTAVHHLLGRIEEEASLCC* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0677 299 PANTHER TRANSCRIPTION FACTOR BHLH71 1 298 - -
Apr3g0677 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 165 IPR036638 GO:0046983
Apr3g0677 299 Coils Coil 144 164 - -
Apr3g0677 299 SMART finulus 102 153 IPR011598 GO:0046983
Apr3g0677 299 PANTHER MAX DIMERIZATION, MAD 1 298 - -
Apr3g0677 299 CDD bHLH_AtFAMA_like 99 158 - -
Apr3g0677 299 Pfam Helix-loop-helix DNA-binding domain 97 148 IPR011598 GO:0046983
Apr3g0677 299 Gene3D - 88 168 IPR036638 GO:0046983
Apr3g0677 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 147 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0677 Apr-Chr3 17500590 17502537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0677 88 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 57.143 4.97e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0677 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0677 - - pvu:PHAVU_003G284500g 520.005