Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0676 ATGGCTGCTATTGGCAATCCAAGAACTTGGATTCCTTATATGAACAGCAAAGACTGTTCTCAGGGATTTTGTAGCTTGTACTGTCCACAATGGTGTTACATAGTGTATCCTCCTCCTCCACCCTTTGAATACCCTGATGATGATTCAAGCCCAAATTTCTCACCTCTTGTTATTGCAATCATTGGGATCTTGGCCACTGCTTTTCTTCTAGTGAGTTACTACACTCTAATATCCAAGTACTGTGGCGCCAGAGAATCGACACGCAGAGACTCAAATGATGACATACAAAACAACAACCAGAACCCCTCACTCCATGAACCCTGGCATGTTTCAACAACGGGCCTAGACGAGGCCCAAATCGAGTCCATTGCGGTTTTCAAGTACAATAAAGGAGGTGGTTTTGGTGGAGTCACGGATTGTTCAATTTGTCTAAGTGGGTTTCAAGAAAATGAAAGCGTTAGGCTCTTGCCAAAATGTAGGCACGCTTTTCATCTTCCTTGCATTGACACGTGGCTCAAGTCTCACTCTAGTTGCCCTTTGTGTCGCGCCAGCATATTCAATTTGAATGCTTTGGTTGCAGCGTTAGAGGTTGAGGTACCGGCGAGGAATGAGGGTGAAAACTTGGGTGTTGGAAGGGGCAATGAGTCTGTGGTGGAGGAAGAAGAGAGCGTGCATCGTGATAGAGCTTATCCAAAGCCTGCATTGCGTGCATTTAGTGATTTGAGTGGGTTACAAGGGAGGCACAGAGTGATTGAGATTAGAGATGAAGAGGTGAGTGAGTCCATTGGAAGGTCAGTGTCTTTGGACCATTCGCTTCAAAGTGCTGTTTCTGTTGCTCATGTGTTGCATATGAATGCAGAGGAATATTCCCATGTGGAAGGGTGCTCTGATACTCATGTTGGTCCTTCCAAGAGATCTCGAGGAGAGAGTAGCTACAAAAACAGAGTATTGCATTGTGTGCTGAGTCCAATTGCAATGAAGAGGTCGTTTTCCAGTGGAAGATTATCTTTTAGCAAAAATGGCAGAGCGAGGCAGGGACTCTGA 1044 0.454 MAAIGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLVSYYTLISKYCGARESTRRDSNDDIQNNNQNPSLHEPWHVSTTGLDEAQIESIAVFKYNKGGGFGGVTDCSICLSGFQENESVRLLPKCRHAFHLPCIDTWLKSHSSCPLCRASIFNLNALVAALEVEVPARNEGENLGVGRGNESVVEEEESVHRDRAYPKPALRAFSDLSGLQGRHRVIEIRDEEVSESIGRSVSLDHSLQSAVSVAHVLHMNAEEYSHVEGCSDTHVGPSKRSRGESSYKNRVLHCVLSPIAMKRSFSSGRLSFSKNGRARQGL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0676 347 SMART ring_2 140 181 IPR001841 -
Apr3g0676 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 189 IPR013083 -
Apr3g0676 347 Pfam Ring finger domain 139 182 IPR001841 -
Apr3g0676 347 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Apr3g0676 347 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 341 - -
Apr3g0676 347 MobiDBLite consensus disorder prediction 87 108 - -
Apr3g0676 347 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 341 IPR044675 -
Apr3g0676 347 MobiDBLite consensus disorder prediction 93 108 - -
Apr3g0676 347 SUPERFAMILY RING/U-box 139 188 - -
Apr3g0676 347 CDD RING-H2_PA-TM-RING 139 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0676 Apr-Chr3 17488207 17489250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0676 1 218 C3H Transcription Factor Family AT3G03550 51.250 3.24e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0676 - - vun:114176645 479.559