Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0656 ATGTCTCCACCACTGCTTGTTACTGAAGATGAAGGGCAGAGCAATGCCTCAATGGTAGCATCTGCATCTTCACAATCCTTGGACTGTTTCTCCCAAAATGAGGCTAGACTGAAAGAACGCAATTACCTGGGATTGTCAGATTGCTCTTCAGTCGACAGTTCTACTGTCCCAAGCTTGTCTGATGAGAAAAAGAAGAACCTGAATTTGAAGGCTACTGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATCCAGATCTTTTCTCATTGAGCTCAACAAAACTTGACGAGAAACCCTTGTTCCCTTTGCTTCCTTCAAAAGATGGAATCTGCTTATCATCCCAGAAAAATGTGGTTTCAGGGAACAAAAGAGGTTTTGCTGACACAATGGAGCCTGAGGTGAAAACCTTTCCTTTTAATGAGTTTTCTGGCAATGCAGGGATAAACATAATGCTATCACCTAGACCTTCTGGAGCTCAGCCAATCACAGTGAAAGAAATACCAAGCAAGGTGTTACAAGAAAGCCCTTGTGCTGCAAATGGAACTGGTCATAACCATACTGGAGCTTCTATCAGTGGCAGTGCACCAGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCTACCAATTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCCAGCTGCACTGTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTTGATCTAAGAAACTATACAACATACCAGGATCTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAATGCGGTTCCCATGGAGCTCCAGGTAGAGAAATGTTGAGCGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCAGAATATGTACTTACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGAGATGTTCCGTGGGATATGTTCATTGAGACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCGAGGGCCGTGGAAAAATCCAAGAGCAGGAGTTAG 1074 0.4451 MSPPLLVTEDEGQSNASMVASASSQSLDCFSQNEARLKERNYLGLSDCSSVDSSTVPSLSDEKKKNLNLKATELRLGLPGSQSPERDPDLFSLSSTKLDEKPLFPLLPSKDGICLSSQKNVVSGNKRGFADTMEPEVKTFPFNEFSGNAGINIMLSPRPSGAQPITVKEIPSKVLQESPCAANGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATNSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQDLSSALEKMFSCFTLGQCGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIETCKRLKIMKGSDAIGLAPRAVEKSKSRS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0656 357 MobiDBLite consensus disorder prediction 7 25 - -
Apr3g0656 357 MobiDBLite consensus disorder prediction 1 25 - -
Apr3g0656 357 MobiDBLite consensus disorder prediction 178 199 - -
Apr3g0656 357 SUPERFAMILY CAD & PB1 domains 235 338 - -
Apr3g0656 357 Gene3D - 234 351 - -
Apr3g0656 357 Pfam AUX/IAA family 72 348 IPR033389 -
Apr3g0656 357 PANTHER AUXIN-INDUCED PROTEIN 2 350 - -
Apr3g0656 357 ProSiteProfiles PB1 domain profile. 237 341 IPR000270 GO:0005515
Apr3g0656 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 350 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0656 Apr-Chr3 16767632 16772935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0656 240 336 B3 DNA Binding Superfamily AT2G46530 34.021 2.89e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Apr3g0656 AUX_IAA 1.5e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0656 K14484 - gmx:100789251 612.838