Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0654 ATGGAGCTTTCTCAACTTGGTTTTCTAGAGGAGCTAGTAGCTCCAAGAAGAGACACATGGAATGCTTTGTCCACAGGGTTGAGTGACCTATTCCCTAGTGGTTGTTGGAGCTTTGACTCTTTTATTGAGAACCCATCTTTGGCCACTTCAACCATCCCATTTGCTGCATTTTCAGCACCAATAGACCCCAGATTTGATTGCCCTTACAGTAATGAAGCAGCAGCTGCATACCCATTTGGTCATGATGATGGGTTCACAATAATGCCAGAACTTCACACATCATACACCAGGAATGTTGATAATGACCCACCACCCCCACTTCCACTACACCAAGATAACCCATTAGTGAAGGATGAAGAGATTGGCTTTGTAAGGAGTGATGACAAGAGCTTGGATGAACGGAAGAGTGTCTGCAAAGTTGAGGAGCAACAACAAGGCACAGATGTTCAAGTCTTCAACATTGGCATATGTGATGATGGAGAGAGAAAACCCAAATCCAAGAAGGTAGAAGGGCAACCTTCAAAGAATCTTATGGCTGAAAGAAGGAGAAGAAAGCGTCTTAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCAAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGACACCATAGACTACATGAAAGAGCTTCTGGAAAGGGTTGGCAAGTTGCAAGAGGAAGAAGGGGCAGAGGGCTCAAGTCAGATTAGTCTCTTTGACATTTCAAAAGAACAACTTAAGCCGAATGAAGCAATAGTTAGAAATTCCCCCAAGTTTGATGTTGAGAGGAGAGACAAGGACACGAGGATTAGCATCTGCTGTGCAACAAAACCTGGATTGTTACTATCAACAGTGAATACCTTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGTAGCTTCAATGACTTTGCAATGGAAGCATCTTGTTCTGAGGTAGCAGCACAGAGAAACTGTATTTGCCCTGAAGAGATAAAACAAGCACTATTCAGAAATGCAGGCTTTGGTGGAAGATGTGTCTAG 1038 0.4326 MELSQLGFLEELVAPRRDTWNALSTGLSDLFPSGCWSFDSFIENPSLATSTIPFAAFSAPIDPRFDCPYSNEAAAAYPFGHDDGFTIMPELHTSYTRNVDNDPPPPLPLHQDNPLVKDEEIGFVRSDDKSLDERKSVCKVEEQQQGTDVQVFNIGICDDGERKPKSKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERVGKLQEEEGAEGSSQISLFDISKEQLKPNEAIVRNSPKFDVERRDKDTRISICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFAMEASCSEVAAQRNCICPEEIKQALFRNAGFGGRCV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0654 345 PANTHER - 2 345 - -
Apr3g0654 345 SMART finulus 177 226 IPR011598 GO:0046983
Apr3g0654 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Apr3g0654 345 Pfam Helix-loop-helix DNA-binding domain 177 220 IPR011598 GO:0046983
Apr3g0654 345 CDD ACT_UUR-ACR-like 271 311 - -
Apr3g0654 345 Gene3D - 179 254 IPR036638 GO:0046983
Apr3g0654 345 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 345 - -
Apr3g0654 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 232 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0654 Apr-Chr3 16668472 16670069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0654 63 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 50.000 4.50e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0654 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0654 - - gmx:100806571 461.07